Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4151 ATGACCCAAACAACCAACATTTTCCTAATTTCACTTATTTTTCACTTTTTCACCCATGGAACATCAATGCTTAACCTCACTCTTCCTGGTCAACATCCAGACCCAGAATCTGTTGCTATACAAGTTCACAGGAAAGTGAATGTTTCAATGGGAAGAAGAGAAATGCTAACAATATCAAACAAAGATTTCTCAACATCATGTCTAACAGGAAACCCAATTGATGATTGTTGGAAATGTGACACAGATTGGGCCAACAATCGTCAAAGGTTAGCTGATTGTGCAATAGGGTTTGGACAAGATGCAAAAGGAGGAAAAGGTGGTAAATTTTACATTGTAACAGATTCCTCAGACAATGATCCTGTGAATCCAAAACCTGGTACTCTTAGATACGCTGTGATACAAAATGAGCCATTGTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCTCAAGAGCTTATTTTTAATAGCTTTAAAACTATTGATGGGCGTGGTGCTGATGTGCATATTGTGGGTGGTGGTTGCATTACTCTTCAGTATATTAGTAATGTTATTATACATAACATTCATGTTCACCATTGTCATCCCTCCGGCAACACTAATGTGCGGTCGAGTCCAGAACACTACGGATACCGAACATTATCCGATGGAGATGGAATCTCAATATTCGGATCAAGAGACATATGGATCGACCATTGCACACTCTCCCGTTGCAAAGACGGTTTAATAGATGCCGTTATGGGTTCAACAGCGATAACAATCTCTAACAACCATTTCTCACACCACAATGAGGTTATGTTGCTAGGTCACAGTGACCACTACAAACCAGATTCAGCAATGCAAGTAACAATAGCATTCAACCATTTTGGAGAACAGTTAGTTCAGAGAATGCCACGTTGCAGGCTAGGATACATCCACGTGGTCAACAATGATTTTACAAGGTGGGAGATGTATGCTATTGGTGGAAGTGGGGGACCAACTATTAATAGTCAAGGTAACCGATATACGGCTCCTGAGGATGTTGATGCGAAACAAGTTACGAAGAGGTTGGATTCGGGTGACGGGGAATGGACTTCATGGAATTGGAGATCAGAAGGTGATGTTATGGTGAATGGTGCATTTTTTGTTGATTCAGGTGGTGATAGTGAAGGGAATTTTGAGAAGGCTTATAGTATTGACCCTAAAGCTGTTGATAGGATTTCAGTTCTTACTATGTCTGCTGGTGTTCTTGGTGTTGCTAGGGACAATAATCTGGGAATGTGGACAAGAGCACCAAATGGTGGTGGTGATTATAGTACTATTTCATATTCCGGAGGACCAGAAGAGTATACAGATGACATGTCCCATAGTACAATGCTTTTGACCTATTCTCCTACTTTGACTCTTGTTTCTATCTTTGTTGCACTCTTTTGTTTGTTGTATCATCATGTTTCCCTATGA 1443 0.4026 MTQTTNIFLISLIFHFFTHGTSMLNLTLPGQHPDPESVAIQVHRKVNVSMGRREMLTISNKDFSTSCLTGNPIDDCWKCDTDWANNRQRLADCAIGFGQDAKGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTLSDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTINSQGNRYTAPEDVDAKQVTKRLDSGDGEWTSWNWRSEGDVMVNGAFFVDSGGDSEGNFEKAYSIDPKAVDRISVLTMSAGVLGVARDNNLGMWTRAPNGGGDYSTISYSGGPEEYTDDMSHSTMLLTYSPTLTLVSIFVALFCLLYHHVSL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4151 480 Gene3D - 70 412 IPR012334 -
Tpr1g4151 480 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Tpr1g4151 480 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Tpr1g4151 480 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Tpr1g4151 480 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Tpr1g4151 480 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Tpr1g4151 480 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Tpr1g4151 480 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Tpr1g4151 480 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Tpr1g4151 480 PANTHER PECTATE LYASE 18-RELATED 1 435 IPR045032 GO:0030570
Tpr1g4151 480 Pfam Pectate lyase 154 322 IPR002022 -
Tpr1g4151 480 PANTHER PECTATE LYASE 1 435 - -
Tpr1g4151 480 SUPERFAMILY Pectin lyase-like 62 386 IPR011050 -
Tpr1g4151 480 SMART amb_all 145 342 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4151 Tpr-Chr1 47960660 47966582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4151 1 465 Polysaccharide Lyase AT3G53190 69.703 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4151 K01728 - gmx:100815062 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4151 1 47960660 47966582 Tpr1g4151 1 47960660 47966582 ECH