Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4150 ATGAATGTGGAAACATATAAATATCAAGAAGCCATGCAAGGAGAAAATTTGCGTAAGGGGACTTGGCTTCAAGAAGAAGATGAACAATTGACTAGCTTTGTGACCCGTCTTGGGGAACGAAGGTGGGATTCCCTTGCGAAAGTAGCCGGCCTTAGGAGAAGTGGTAAAAGTTGTAGGTTAAGGTGGTTGAACTATCTTCGTCCAAATCTCAAGCATGGCCCTTATAGTGTCGAAGAAGAGAGGCTTATTATTCAACTTCAGCAGCAATGGGGAAACAAGTGGTCCAAGATTGCTCGTAGGCTTCCCGGAAGAACCGACAATGAAATAAAAAACTATTGGAGAACACATTTACAAAAGAGAGTACAAGTTCAACAAGAAGGTGAAATATTTTTTGTGCTATTATATACATAA 411 0.4039 MNVETYKYQEAMQGENLRKGTWLQEEDEQLTSFVTRLGERRWDSLAKVAGLRRSGKSCRLRWLNYLRPNLKHGPYSVEEERLIIQLQQQWGNKWSKIARRLPGRTDNEIKNYWRTHLQKRVQVQQEGEIFFVLLYT* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4150 136 Gene3D - 73 129 - -
Tpr1g4150 136 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Tpr1g4150 136 Pfam Myb-like DNA-binding domain 73 117 IPR001005 -
Tpr1g4150 136 PANTHER MYB TRANSCRIPTION FACTOR 11 128 - -
Tpr1g4150 136 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Tpr1g4150 136 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 11 128 - -
Tpr1g4150 136 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Tpr1g4150 136 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Tpr1g4150 136 CDD SANT 74 117 IPR001005 -
Tpr1g4150 136 Gene3D - 19 71 - -
Tpr1g4150 136 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Tpr1g4150 136 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Tpr1g4150 136 CDD SANT 21 66 IPR001005 -
Tpr1g4150 136 SMART sant 18 68 IPR001005 -
Tpr1g4150 136 SMART sant 71 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4150 Tpr-Chr1 47956205 47957647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4150 15 122 MYB Transcription Factor Family AT5G59780 62.963 2.64e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g4150 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4150 K09422 - gmx:100814530 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4150 1 47956205 47957647 Tpr1g4150 1 47956205 47957647 ECH