Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4140 ATGGCCAAAAACTGCTTCGACCTCAAAACAATGACATATTCTTCACCCAGACAATCCATCCACCTTCCAACTGACCCCAACCTCTCCCTAACCTCCTTCCTCTTCCAATCCACTTCTTCCCTCGCCGATACCATCGCCATTGCCGACGCTCACACCGGTGACTCCCTAACCTTCCGCCAACTCAAAATCGAAGTCTACGCCCTCTCTCAATCCTTGCTCCGCATCGGAATTCGACAAGGCGATATCATTTTGCTATTCGCACCTAACTCAACACGCTTCTCCGTTTGTTTTCTCGCTATAGCTGCTATAGGTGCTATTGTCACCACCTGTAGTCCTTTGTATACCGTCTCCGAACTCTCCAAGCAAATTCAAGACTCCAAACCCAAACTCGTTGTAACCGTATCCGAGCTATTCGACAAAATAGAAGAATTGAATATCGATTTACCTTTCATATTGCTCAACGATTCTTTGAACAAGTTCGGTTCTAGGTTTTTGAACTATGATGATCTGATCGGAGATTTTTACAATAGCTCCGACGAGATTCCGGCGAACTGTGTTGTTTCGCAATCCGATGTGGCGGTGATTCTGTACTCTTCAGGTACCACGGGGAGAAGTAAGGGAGTGATGTTGACTCATCGGAACTTCATAGCGACGGCGGTGGCGGGAGTGGCGGATCAAGACCGTTACGGTGAGGGGAAGAACGTGTTCCTGTGTTTTGTGCCGATGTATCACGTGATGGGATTGGCGGTTATAACTTACACACAGTTGAGGAGAGGGAACACGGTGGTAACGATGGCGAGATTTGATCTGGAGAAGACTTTAGCGGCGGTGGAGAAGTTTAGAGTGACGTATTTGTATGTTGCTCCACCGGTGATGGTGGAGATGATCAAGCGGCGTGACATTTTGAGCGGTTATGACTTGTCGTCGCTGAAGCAACTTGCCGGCGGTGCTGCTCCGTTGGGGAAAGATGTGATGCAAGAGTGTGCTAAGATTCTTCCGCAAGTTGAAATCATTCAGGGGTATGGCATGACTGAAGCATGTGGACTTATTTCCTTTGAAAATCCAAAGGAACGGGATGGAAACTTTATTTCAGGTTCAACTGGAACATTAGTTCCAAGTATAGAATCCCGAATTGTTAGTTTGGAAACATTGAATCCCCTCCCACCCAATCAAACAGGGGAAATCTGGCTACGAGGACCTACTATGATGAAAGGATACTTTAACAATCCAGAAGCAACAAAATATACCATTAATGATGAGGGTTGGATGATTACAGGCGATCTTGGTTATTTTGATGAAAATGGACAGTTATTTGTTGTGGATCGAATTAAAGAGCTCATCAAGTGTAACGGGTATCAAGTGGCACCAGCTGAACTTGAAGATTTACTAAAATCTCACCCTGAAATTTCTGATGCTGGGGTGATCCCATCCCCTGATGCCAAAGCTGGTGAGGTTCCGGTGGCTTATGTTGTTCGCTCGCCCAATAGCTCGATAACCGAAGTAGACATTCAAAAATTTGTAGCAAAACAAGTTGCACCATACAAAAGATTGCGGCGAGTGAATTTTGTAGACAAGATTCCAAAGTTACCCACAGGAAAGATCTTAAGAAAGGATCTCGTAACTCTTGATCAACAAATAACATCAAAGTTATAG 1653 0.4513 MAKNCFDLKTMTYSSPRQSIHLPTDPNLSLTSFLFQSTSSLADTIAIADAHTGDSLTFRQLKIEVYALSQSLLRIGIRQGDIILLFAPNSTRFSVCFLAIAAIGAIVTTCSPLYTVSELSKQIQDSKPKLVVTVSELFDKIEELNIDLPFILLNDSLNKFGSRFLNYDDLIGDFYNSSDEIPANCVVSQSDVAVILYSSGTTGRSKGVMLTHRNFIATAVAGVADQDRYGEGKNVFLCFVPMYHVMGLAVITYTQLRRGNTVVTMARFDLEKTLAAVEKFRVTYLYVAPPVMVEMIKRRDILSGYDLSSLKQLAGGAAPLGKDVMQECAKILPQVEIIQGYGMTEACGLISFENPKERDGNFISGSTGTLVPSIESRIVSLETLNPLPPNQTGEIWLRGPTMMKGYFNNPEATKYTINDEGWMITGDLGYFDENGQLFVVDRIKELIKCNGYQVAPAELEDLLKSHPEISDAGVIPSPDAKAGEVPVAYVVRSPNSSITEVDIQKFVAKQVAPYKRLRRVNFVDKIPKLPTGKILRKDLVTLDQQITSKL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4140 550 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Tpr1g4140 550 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 5 542 - -
Tpr1g4140 550 CDD 4CL 22 539 - -
Tpr1g4140 550 Pfam AMP-binding enzyme 41 449 IPR000873 -
Tpr1g4140 550 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Tpr1g4140 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 542 - -
Tpr1g4140 550 Gene3D - 11 444 IPR042099 -
Tpr1g4140 550 SUPERFAMILY Acetyl-CoA synthetase-like 25 545 - -
Tpr1g4140 550 Gene3D - 445 547 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4140 Tpr-Chr1 47705163 47711345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4140 13 550 Monolignol Biosynthesis Gene Families AT4G05160 58.011 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4140 K01904 - qsu:112025709 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4140 1 47705163 47711345 Tpr1g1153 1 10412474 10414719 ECH
Tpr1g4140 1 47705163 47711345 Tpr1g4140 1 47705163 47711345 ECH