Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4131 ATGAATTCATCATCAATTTCGGTAGTCGATTGTGTCGATAAATGGGTGAACAATATCCATGAACAAAATGTGCAACCTGGGCAAGACAGTATTGTCGATAGCGAACCATACTTGGAAATGAAGTTTGACTCTGAGGCAGCTGCTTATGATTTTTATAATGAGTACAGTAAAAAACTTGGATTTGGTATTCGCAAAGAATATGTAAACAAAAGCAAAAAGGATGGAGTCTTAACTTCAAGAAAATTCACATGCTTCAAAGAGGGCATACGAGGTGTTGACAAAAGACGTCAGCCGACGGGGGAGCGCAATAGAGCAGAAACTAGAACGGACTGCCAAGCGCGTATGGTTATTCGACTTGATCGGAAGATAGGGAAATATAAGGTTGTTGACTTTGTAGCTAAACACAACCACCCTCTTCAGCCACAAAAGTATGTTCACATGATTCGCTCTCATCGGCGCATATTTGAGGTACAAGCATCACAAATTGTATTGGGGGATCAATCTGGATTAAGACCAAAAGGTTTACATGAATATATATCAAAGCAAGCTGGTGGGTTAGAGACAGTTGGTTTTACAAAACAAGACCTTAAGAATTACCTTCGAACCAAAAGGATGCATTCACTAAAGTTTGGTGAAGTGGGTGCCTTGATTAAGTATTTCAAACATGAAAGTGAAAATCCCTCATTCTTCTATGATTTTCAAATGGATGTTGATGATGAAATAACAAATATATTTTGGGCTGATGCACAAATGATAAATGATTATGGGTATTTTGGTGATGTCATCACTTTTGATACCACGTATAAGACAAATAAGGATTATCGGCCATTGGGAGTATTTGTAGGACTTAATAATCACAGGCAAACAATCATTTTCGGGGCAGCATTGTTATATGATGAAACAATCCCTTCTTTTCAGTGGTTATTTGAAACTTTTCTCAAAGCAATGGGTGGAGCAAAGCCTAAAACAATTCAAACAGATCAAGATGCCGCAATGGCGAAAGCTATTTCTTTAGTTATGCCGGAAACATTTCATGGACTGTGCACTTGGCATATAAGACAAAATGCTATAAGGCATGTGAACCATCTATATCAAAAGAGTTCACAATTTGGTAAGGATTTTGAAGCATGCATAGATCTACACGAAGAGGAAGGTGAATTTTTACAAGCATGGAGTTCTTTACTTGTTGAGTATAATGTTTCAGAAGGTTCGTGGTTGCATACGATTTTTCAATTGAAGGAAAAATGGGCATGGACTTATGTTCGGAAAACATTCACAGCGGGTATGAGGTCTACTCAGTTAAGTGAGAGTTTTAATGCTGATTTGAAAAACTATTTGAAGTCGGATTTAAATTTGGTACAATTTTTTACACACTTTAAAAGGGCTGTCAATGGTAGACGAAACAATGAGTCAGAAGAGGAATATGCGTCAAGACATAAGTTGCCTAGATTGATGAACAAGGCACGTATGCTTGTACAAGCTGGAAAAGTTTACACTCCAAAAATATTTGAGGAATTCCAAGCGGAATATCAGGAATATCAAGACACTTGCATAAAAGAGGTGAAAGAAGGTTTGTATGTTGTTACAAATTATGATAATGCAAAAGAGAGGATGGTGATGGGAAATATTCAGGAACAAGGAGTTTCTTGTGATTGTCGTAAATTTGAGACGCATGGAATCTTATGTAGTCATGCTCTGAAAGTCTTAGATGTCATGAATATTAAGTTAATTCCTGAACACTATATACTAAAGAGATGGACAGGAGATGCAAGGTTGGGAAGTAATAAAGATTGGCAAGGGAAACATGTTGAATTAGACGTAAAAGCCGATTTCATGAAGCGATACAATGAGTTATGTCCTCGAATGATTAAGCTGATCAACAAAGCTTCAGTTGATCATGAAACTTACACATTTTTGTCCAAAGTTTCTGAAGAGTCCAACAAAATAATCGATGATATATTGGAAAAAAAGCATGTGGACAAAGAAGCAAGTGGAGTGGTTCATGTATCCATATCAATTGCAAATGATGAAATTGAGAACAATGTGGACACTGTTGGTGGGGCAGCCGGCATAAAGAAGCGAGATTGTTCACATAAGAAGAAAAAACGAGCTAAATCTTGGGTTGAGAGATTAGATAGAAAGAGAAAGACATGCTTATCATCAAACAAAAAAAGACAGTCGTCGCATCAGCAAGCAATGTTATCACAATCCAGTCAAGTTGATACGTCGAGACTTGAAGCTATGTTGACACCATCAGACCAAGTTGACACATTGGGTCTTCAACATCAAGCAACAAGTCAATTTGGCACATTGGGATTTCAAGGCTTGTTGACACCATCAAGCCAAGTTGACACATTAGGTCTTCAACATCAAGCAACAAGTCAATTTGGCACATTGGGATTTCAAGGCATGTTGACACATTCAAGTCCAGTTGACATATCAGGACTTCGCAATTTCTTTTAG 2463 0.3756 MNSSSISVVDCVDKWVNNIHEQNVQPGQDSIVDSEPYLEMKFDSEAAAYDFYNEYSKKLGFGIRKEYVNKSKKDGVLTSRKFTCFKEGIRGVDKRRQPTGERNRAETRTDCQARMVIRLDRKIGKYKVVDFVAKHNHPLQPQKYVHMIRSHRRIFEVQASQIVLGDQSGLRPKGLHEYISKQAGGLETVGFTKQDLKNYLRTKRMHSLKFGEVGALIKYFKHESENPSFFYDFQMDVDDEITNIFWADAQMINDYGYFGDVITFDTTYKTNKDYRPLGVFVGLNNHRQTIIFGAALLYDETIPSFQWLFETFLKAMGGAKPKTIQTDQDAAMAKAISLVMPETFHGLCTWHIRQNAIRHVNHLYQKSSQFGKDFEACIDLHEEEGEFLQAWSSLLVEYNVSEGSWLHTIFQLKEKWAWTYVRKTFTAGMRSTQLSESFNADLKNYLKSDLNLVQFFTHFKRAVNGRRNNESEEEYASRHKLPRLMNKARMLVQAGKVYTPKIFEEFQAEYQEYQDTCIKEVKEGLYVVTNYDNAKERMVMGNIQEQGVSCDCRKFETHGILCSHALKVLDVMNIKLIPEHYILKRWTGDARLGSNKDWQGKHVELDVKADFMKRYNELCPRMIKLINKASVDHETYTFLSKVSEESNKIIDDILEKKHVDKEASGVVHVSISIANDEIENNVDTVGGAAGIKKRDCSHKKKKRAKSWVERLDRKRKTCLSSNKKRQSSHQQAMLSQSSQVDTSRLEAMLTPSDQVDTLGLQHQATSQFGTLGFQGLLTPSSQVDTLGLQHQATSQFGTLGFQGMLTHSSPVDISGLRNFF* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4131 820 ProSiteProfiles Zinc finger SWIM-type profile. 526 573 IPR007527 GO:0008270
Tpr1g4131 820 Pfam MULE transposase domain 261 355 IPR018289 -
Tpr1g4131 820 PANTHER OS03G0181600 PROTEIN 28 656 - -
Tpr1g4131 820 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 28 656 IPR031052 GO:0006355
Tpr1g4131 820 MobiDBLite consensus disorder prediction 718 742 - -
Tpr1g4131 820 SMART 26again6 548 575 IPR006564 GO:0008270
Tpr1g4131 820 Pfam SWIM zinc finger 526 570 IPR007527 GO:0008270
Tpr1g4131 820 Pfam FAR1 DNA-binding domain 50 141 IPR004330 -
Tpr1g4131 820 MobiDBLite consensus disorder prediction 723 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4131 Tpr-Chr1 47591651 47594187 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g4131 MULE 5.8e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4131 - - cam:101500125 1218.37