Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4129 ATGGCAATGAATGCAGTGTTTAGGGCTACTAGACCCACCAGTTCTGGTGTAGTGAGTACCGTGTATCAAGTCGCTACGTATCTTAGAGTTAAGAACTATCGTATGCTTAGTTCTTTTATTGGGAAGGTACAGAAGAGTTTATCACTCTTTGTACCAAAAAAGCATACATTGAGCTACTTGAATGAAGATCATGCCACAGCCACAGACACAGCCACAACTGAGCTTGCAGATGATGTTATGAAAGGTTGCTTTGCTGTTATGGCAAAGAAGGGTGAGGAAACTAGAAGGTTTATTGTTGGGTTAGATTACTTAACTGATCCTACTTTTTTAGGATTGCTTGATGAAGCTGTGGAGGAATATGGTTTTAGACAAAAAGGAACTCTCGTTGTTCCGTGTCGCCCGATAGAATTACAGAACATTTTAGATGGTCGGAAAACCTAG 441 0.4059 MAMNAVFRATRPTSSGVVSTVYQVATYLRVKNYRMLSSFIGKVQKSLSLFVPKKHTLSYLNEDHATATDTATTELADDVMKGCFAVMAKKGEETRRFIVGLDYLTDPTFLGLLDEAVEEYGFRQKGTLVVPCRPIELQNILDGRKT* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4129 146 Pfam Auxin responsive protein 68 141 IPR003676 GO:0009733
Tpr1g4129 146 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 35 145 - -
Tpr1g4129 146 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 35 145 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4129 Tpr-Chr1 47584104 47584659 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4129 54 133 Calmodulin-binding Proteins AT5G20810 41.250 2.59e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4129 - K14488 gmx:106795483 136.346