Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4118 ATGATGGAGAACCAGAACCAGAAAACACAAAGTTGGTTAGAAAAGGCAACACCGTTCATAGCTATCTTGTCTTTGCAGTTAGGATATGCAGTTATGGATGTTTTATCGAAGGCTGCATTAAATAAAGGAATGAGCAACTATGTTTTCGTTGTGTACCGCCATGCCATTGCATTCATTGTCATAACTCCTTTTGCACTCTATTTTGACAAGAAAGTAAGACCGAAAATGACAATTTCAATCTTCATCAAGATAGCGGCGCTCAGTTTGTTAGAGCCAGTTATTGATCAGAATTTGTATTTTTTGGGGCTGAAATATACAACGGCAACCTTTGCAGCTGCCATGAGCAATATTCTTCCTGCTATTACCTTCATATTAGCTTCAATTCTTAGGCTTGAGAAAATAAAGATAAAAAGTATACGAAGCCAAGCAAAGATATTGGGAACAATAGCTACTGTTGCAGGTGCGATGGTGATGACATTAGTTAAAGGGCCGATACTTTTAGAGACCTTCGGAGGCAAGAGCCACATCCATCATAGTGGGGGTACAAGTAGTAATCAACATACAATACTTGGATCTGTATTGATCACCATTGGATGCTTTAGTTGGGCTTGTTTTTTTAACCTTCAAGCTATTACCCTTGAAGCCTACCCTGCGGCACTCTCTCTTTCCTCATGGATATGCCTATTGGGTACAATTGAAGGTGCAGCAGTGGCTTCAATAATGGAATGGGGTCGTCCCTCAGTTTGGTCCATAAAATGGGATATGAGATTATTGTCTACTCTTTATACGGGCATATTCTGCTCAGGTCTAGCGTATTACTTTCAAGGAGTAGTGATGAAAGCTAGAGGTCCAGTTTTTGTCACAACATTTAGTCCCTTATGTATGGTGATTGTTGCTATCATGGGATACTTCCTTCTTGCAGAGCAAATGTTTTTGGGAAGAGTGATTGGTGCATTTATCATTTGTTTGGGCTTGTACCTTGTTGTGTGGGGAAAAAGCAAAGATTACAATAATCCATCAAATCCAATTATTGGAGACTCTGTTTTACCGACTAAGCAAACTACGGGTGAAAATTGTGCTTAA 1083 0.3961 MMENQNQKTQSWLEKATPFIAILSLQLGYAVMDVLSKAALNKGMSNYVFVVYRHAIAFIVITPFALYFDKKVRPKMTISIFIKIAALSLLEPVIDQNLYFLGLKYTTATFAAAMSNILPAITFILASILRLEKIKIKSIRSQAKILGTIATVAGAMVMTLVKGPILLETFGGKSHIHHSGGTSSNQHTILGSVLITIGCFSWACFFNLQAITLEAYPAALSLSSWICLLGTIEGAAVASIMEWGRPSVWSIKWDMRLLSTLYTGIFCSGLAYYFQGVVMKARGPVFVTTFSPLCMVIVAIMGYFLLAEQMFLGRVIGAFIICLGLYLVVWGKSKDYNNPSNPIIGDSVLPTKQTTGENCA* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4118 360 Pfam EamA-like transporter family 20 158 IPR000620 GO:0016020|GO:0016021
Tpr1g4118 360 Pfam EamA-like transporter family 190 329 IPR000620 GO:0016020|GO:0016021
Tpr1g4118 360 PANTHER WAT1-RELATED PROTEIN 13 343 IPR030184 GO:0016021|GO:0022857
Tpr1g4118 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 160 - -
Tpr1g4118 360 PANTHER WAT1-RELATED PROTEIN 13 343 - -
Tpr1g4118 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4118 Tpr-Chr1 47295164 47300925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4118 5 358 Nodulin-like Gene Family AT2G37460 61.972 1.71e-160 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4118 - - cam:101496299 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4118 1 47295164 47300925 Tpr1g4118 1 47295164 47300925 ECH
Tpr6g3437 6 37135658 37138905 Tpr1g4118 1 47295164 47300925 PCT