Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4095 ATGGCGGCATCACGGCGGCTCAGGGAGCTGCAATCCCAACCAGGAAACAAGATCTGCGTCGATTGTTCTCAGAAGAATCCACAGTGGGCATCAGTATCCTACGGCATCTTCATGTGCCTGGAATGCTCCGGCAAACACCGTGGCCTCGGGGTTCACATATCCTTCGTACGATCCGTCACCATGGATGCTTGGTCCGAAATCCAAATCAAAAAAATGGAAGCTGGTGGTAACGACAATCTCAACGCTTTCCTTGCACGCTATTCAATACCTAAGGAAACCGATATCGTTACAAAGTATAACACCAACGCCGCTTCCGTTTACCGTGACAGGATCCAAGCTATGTCAGAAGGTCGTCCATGGCGCGATCCGCCTGTTGTTAAGGAGAATTTTGGTTCCAAGGGGAGGCCGCCGCTGTCACAGACTCGTCGGAATAACGATTCCTCTTGGGATGATTGGGATGGAGGAAGTTCCGTCGATGTGAGGAGTAAGTCCACTGGGGATTTCAGAAGCTTGAACGGCGGTGGAGCGCCGGTGAGATCGAGGTCGACGGAGGATATTTATACGCGGTCGCAGTTGGAGGCTTCTGCGGCCAATAAGGAGGGATTCTTCGCGAAGAAGATGTTGGAGAATGAATCGAAACCGGAAGGACTTCCACCGTCTCAAGGTGGGAAGTATGTTGGGTTTGGATCCAGTCCCGCGCCTTCGCAAAGGAGTAATCCGCAAAACGACTATTTATCTGTTGTTTCACAGGGGATTGGTAAGTTATCACTAGTTGCTGCTTCTGCTGCTAATGTTGTTCAGGCTAGCACTAAAGATATCACCTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAATGAAACTGTCAGCGTTGTCACTCAAAAGACATCAGAAATTGGTCAAAGGACATGGGGTTTAATGAAAGGGGTCATGGCTTTGGCTTCACAGAAGGTTGAGGAGTACACTAAAGAGAACTCAAATTCGACTACTAATAACTGGCAACGAAATGAGAATGATAGAAATGGCTACTATCAGGATTTCAATCAAGAGAACAAAGGCATCAATTCTACTACCGGAAGAGAACAATCTTTGTCAGGGCAATTCAAAACTAATAGCTCAAACTCTTGGGATGATTGGGACCACAAAAATAGTTGGAAGGAAGGACAAACTAAAGGATCAACTCCTTATTCATCTGGTGGTCAGTCTGGTACTCACAATCCAAGCTCTTGGGATGATTGGGACAACAAAGATTCTAGGAAGGAAGAACCTGCTAAAGGATCGGCTCCCCATAATAATGATGCTGGTTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTCGATAATTTTTATGATGGTGCATCTAATAAGAAAACTGTTGGACATAATGGGAAATCAGATGATGCTTGGACGGGGGGTGGCTTTCTCTAA 1434 0.4665 MAASRRLRELQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDNLNAFLARYSIPKETDIVTKYNTNAASVYRDRIQAMSEGRPWRDPPVVKENFGSKGRPPLSQTRRNNDSSWDDWDGGSSVDVRSKSTGDFRSLNGGGAPVRSRSTEDIYTRSQLEASAANKEGFFAKKMLENESKPEGLPPSQGGKYVGFGSSPAPSQRSNPQNDYLSVVSQGIGKLSLVAASAANVVQASTKDITSKVKEGGYDQKVNETVSVVTQKTSEIGQRTWGLMKGVMALASQKVEEYTKENSNSTTNNWQRNENDRNGYYQDFNQENKGINSTTGREQSLSGQFKTNSSNSWDDWDHKNSWKEGQTKGSTPYSSGGQSGTHNPSSWDDWDNKDSRKEEPAKGSAPHNNDAGWAGWDNAKDDGFDNFYDGASNKKTVGHNGKSDDAWTGGGFL* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4095 477 MobiDBLite consensus disorder prediction 321 477 - -
Tpr1g4095 477 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Tpr1g4095 477 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Tpr1g4095 477 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Tpr1g4095 477 MobiDBLite consensus disorder prediction 117 185 - -
Tpr1g4095 477 CDD ArfGap_ArfGap1 3 117 - -
Tpr1g4095 477 SMART arf_gap_3 4 129 IPR001164 GO:0005096
Tpr1g4095 477 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Tpr1g4095 477 Pfam Putative GTPase activating protein for Arf 5 105 IPR001164 GO:0005096
Tpr1g4095 477 MobiDBLite consensus disorder prediction 389 410 - -
Tpr1g4095 477 MobiDBLite consensus disorder prediction 411 428 - -
Tpr1g4095 477 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 396 IPR044519 GO:0005096|GO:0016192
Tpr1g4095 477 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 396 477 IPR044519 GO:0005096|GO:0016192
Tpr1g4095 477 MobiDBLite consensus disorder prediction 211 242 - -
Tpr1g4095 477 MobiDBLite consensus disorder prediction 321 375 - -
Tpr1g4095 477 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 396 - -
Tpr1g4095 477 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 396 477 - -
Tpr1g4095 477 SUPERFAMILY ArfGap/RecO-like zinc finger 5 111 IPR037278 -
Tpr1g4095 477 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4095 Tpr-Chr1 46806992 46810799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4095 5 87 C2H2 Transcription Factor Family AT4G05330 47.619 2.81e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4095 K12492 - gmx:100806519 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3427 6 37009662 37014657 Tpr1g4095 1 46806992 46810799 PCT