Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4086 ATGGGAGAAGAAGTTGTTTGTGTGCAAGCATTGGAAGATGGAAGAACGGAAAATAAAGAGGAATCAAAGACGGAACTGAAACGTGACTATAACCAATGCGTTGCTGATACCGAACCCGATGTTTTTCCCAATAAAAAACAAGCAAAAGAAGTTTCGAACGATGAAGTGCGCTCTGAAGTTACAAATCCCAACGCTTCTTCAACAGAGCATGCACTAACCTTTCATGATATCAGTAGCCAACTCACAGAATCGGAAAATGTTAACCATGCAGAGTGTGGGGAACTTACATCTACTTGTTTGGAAAATTCTTCTAGTTCTCATGATACCACGAGTGATGAAGCCGGTGATCAGAATAATGACAACGATAATGATAATAACAATAATACTTCTCGGAATGATAAAAGTACGGATAGCAACGATGCAGTGATGTCCCGTGTTGTGATGGAAATCCCGAAGCATGCTAGTTCAACTGGTATTAGAAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATAATGATTATCAAACATCTGCTGGCTATACTGATGGAAATGGCTATGGCTATGGCTATCACGGGGATGATGAATATTTGGCAAAGGATGATTCTAATAGTGGGTTTTTAGAGACCTCATATGGCACGGGATATGTTCCTTATGAAGATTCAGATTTGTATTCTGGAAATATGGAATTGAAAATGTCAAAGAAAGTCGTCCCTAACTGCTTCCCCACAAATGTCAAAAAGCTGTTATCAACTGGTATCCTTGATGGAGCTGCAGTAAAATATATCTACAATCCCGGAAAGGTTGAGCTCGATGGGATTATTGGTGGTGGTGGGTATTTGTGTGGCTGTTCAATGTGCAGTTACTCTAGAGTGCTCAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCTAAGACTAGACATCCAAATAATCATATATTCCTAGAAAATGGAAAACCAATTTATAGCATCATACACGAAATAAAAACCGCTCCAAACAGCATGCCAGATGAGATTATAAAGAATGTGGCTGGTTCATCTATCAACGAGGAATCCTTCCAGGTTTGGAAAGAAAGTCTCCTACAAAGCAACAGGAAGGTTCCAACTCATAAAAACTACAGTACAAAGTTTACTGGCATGCGTCATACACACAACAGTCAATCTATAGAAAGTGCGAGCCACTTCTCATCTTCACGTGCGCGAAATCATTTTGAGCAGCAAATGTATGTGAACCAGACAACTGATGAGTGGAAACGAGTGGTGAAGAAGCCAAGCACATACCCTTACAACTCAGGTATACTGCAGAAGAGAAGTGCTGATGGTTGCACTAAGAAAAGGGACAATGATTTGCACAGGTTACTTTTTATGCCTAATGGCCTACCAGACGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAACTACTTGGAGGTTACAAACAAGGAAACGGTATAGTCTGTGGTTGTTGTGATGTAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCGGCTAGGCGTCAACCTTACCGCCACATATATACTTCCAATGGATTGACACTTCATGATATAGCTCTGTCTTTGGCAAATGGTCAAAACCTTACTACGGGAGATAGTGATGATATGTGTGCAATATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGTCCTAGAGCCTTTCATGCAGCCTGCTTAGGATTAAACGGTGTACCAGATAGTGGTTGGCATTGTCTAAATTGTAAAGATAATACGGGTGATGGAGGAGGTGCGAGGCCAATCATGATTCGGTTGACACGGGTTGATAAAGAACCAGAATATGAAATGGGTGGATGTGTTGTTTGCAGGGAAAATGATTTCAGTGTTGATACATTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTTCCAAAGGATAAGTGGTTTTGTTGCGACGACTGTAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGATACAATACCATCTTCCTTGTCTGAACTTATAATTAGGAAGCACGAAGAGAGGGGGTTATGTACGTATGGAAGCATGAATGATATTCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCCGAGCATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGTCGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTCGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCTGTCGTAGTATCTGCCGGGCTTCTTAGGATTTTTGGCTGCAACATTGCTGAGCTTCCCCTGGTTGCTACAAGTAGAGAGCATCAAGGAAAAGGTTATTTTCAAGTGCTGTTCTCTTGCATAGAGAGGTTGTTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTCCCTGCTGCAGGGGATGCAGAGTCAATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGTTATCCAAATATCTTAAAGAGGTGCAGCTCACCCTCTTCAACAAAACTTCAGTGCTGGAGAAGACTGTGCAGCTGGTGACCGAATGA 2667 0.4139 MGEEVVCVQALEDGRTENKEESKTELKRDYNQCVADTEPDVFPNKKQAKEVSNDEVRSEVTNPNASSTEHALTFHDISSQLTESENVNHAECGELTSTCLENSSSSHDTTSDEAGDQNNDNDNDNNNNTSRNDKSTDSNDAVMSRVVMEIPKHASSTGIRKITFKFSKKKEDYDNDYQTSAGYTDGNGYGYGYHGDDEYLAKDDSNSGFLETSYGTGYVPYEDSDLYSGNMELKMSKKVVPNCFPTNVKKLLSTGILDGAAVKYIYNPGKVELDGIIGGGGYLCGCSMCSYSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTAPNSMPDEIIKNVAGSSINEESFQVWKESLLQSNRKVPTHKNYSTKFTGMRHTHNSQSIESASHFSSSRARNHFEQQMYVNQTTDEWKRVVKKPSTYPYNSGILQKRSADGCTKKRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDVEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAICGDGGDLILCNGCPRAFHAACLGLNGVPDSGWHCLNCKDNTGDGGGARPIMIRLTRVDKEPEYEMGGCVVCRENDFSVDTFDDRTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADTIPSSLSELIIRKHEERGLCTYGSMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGCNIAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQLSKYLKEVQLTLFNKTSVLEKTVQLVTE* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4086 888 SMART PHD_3 616 673 IPR001965 -
Tpr1g4086 888 SMART PHD_3 546 587 IPR001965 -
Tpr1g4086 888 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 772 858 IPR016181 -
Tpr1g4086 888 MobiDBLite consensus disorder prediction 57 71 - -
Tpr1g4086 888 MobiDBLite consensus disorder prediction 120 141 - -
Tpr1g4086 888 Pfam Tify domain binding domain 275 326 IPR032308 -
Tpr1g4086 888 Pfam Tify domain binding domain 480 529 IPR032308 -
Tpr1g4086 888 ProSitePatterns Zinc finger PHD-type signature. 547 586 IPR019786 -
Tpr1g4086 888 Pfam PHD-finger 546 588 IPR019787 -
Tpr1g4086 888 CDD PHD1_AIRE 546 586 - -
Tpr1g4086 888 Gene3D - 714 881 - -
Tpr1g4086 888 ProSiteProfiles Zinc finger PHD-type profile. 544 589 IPR019787 -
Tpr1g4086 888 ProSiteProfiles Zinc finger PHD-type profile. 614 675 IPR019787 -
Tpr1g4086 888 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 3 884 - -
Tpr1g4086 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 534 598 IPR013083 -
Tpr1g4086 888 PANTHER AUTOIMMUNE REGULATOR 3 884 - -
Tpr1g4086 888 MobiDBLite consensus disorder prediction 42 56 - -
Tpr1g4086 888 ProSitePatterns Zinc finger PHD-type signature. 617 672 IPR019786 -
Tpr1g4086 888 SUPERFAMILY FYVE/PHD zinc finger 542 588 IPR011011 -
Tpr1g4086 888 MobiDBLite consensus disorder prediction 99 141 - -
Tpr1g4086 888 MobiDBLite consensus disorder prediction 36 71 - -
Tpr1g4086 888 SUPERFAMILY FYVE/PHD zinc finger 612 670 IPR011011 -
Tpr1g4086 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 675 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4086 Tpr-Chr1 46498841 46509617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4086 1 888 PHD Transcription Factor Family AT3G53680 51.588 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr1g4086 TDBD 3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4086 - - gmx:100808999 1451.03