Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4080 ATGTTTTCAGAATTTAATTTTAATTTTCTATTTCATTTCAATTCAGTTCAACACAAGAGAAGCAAAATGAATCACTGTGTACCAGATTTCGATATTCATCATATCGACAAAGAAGATGAAGATTATCATGTACATCTCTCAAAGAAACCTTCAACGCAACAAGACGATGAGATTATGGAACTGTTATGGCAAAACGGTCAAGTTGTGATGCAAAGCCAAAACCACCGCCAATTCAGAAAACCGCCATCACCGGCGGCAAGGAATCATAAAGAGATTCGATCTTCCGATGCAGAGAATTACGAACACTTGTTCATGCAAGAAGATGAAATGGCATCGTGGCTTTTCGATTCCATGAATGAAGATCCTCCTTTCAACCGTCAAGATTTCAGCACAGAATCACTTTTTCATCCAAACGGCGGTGCTGTTATACAAGCAACGGCTTCTCGGCCTCCGATTCATCCGATGAGGAAGCCGGAACAGACGGTGAATAGGAACCACGGTAATGTGAGGAACGAACCAGGCACTTCTTCGAGTTCGATGATTATTGCGGCGGGGAGGGAATCAACAGTGGTCGATTCATGTGATACGCCGATCGTGACGGCGAAGACATATAGATTATCGGAAACGATCAGGAGCACGGCGGAAACTGGATTTGTTAGTGTGAGTACAGGAGGAAAAGCGGCGACAACGAATGGCGGAACGACGATGATGGATATGACAGTGACGTCATCGCCCGATTGTTCAAGCGGGAGTGGTGAACCGGGTCAGAGAAAATCGGAGTTGGACCGGAAAAGGAAACGTCGTGAAACGGAGGAATCTGAGTTTCAGAGCGAGGATGTGGTTTCAAACCTACTGGTTGCATGGTGGGCAATGTTGAAAAGCGGCAGAGGCGAACAGGTTTGTGGCGGTGGAAAGAGCACCACAACGGTGGGTCAGGATGTTGATTTTGAATGTCAAGAAGGAAAAAAACAAGTCCGTGGATCTACATCATCTACAAAGAGATCCCGAGCTGCAGAGGTTCATAATCTCTCAGAGAGGAAGCGTCGAGATAGGATTAATGAAAAGATGAAAGCTTTGCAAGAACTTATACCGCAGTGCAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATCGAATACTTGAAGTCATTGCAGCTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAACAGTTTATGCCGACGATGGGGATGGGAGTGGGAATGGGTTTGGGGATGGAAATGGGAATGAACAGACCAGTGATGCCATTTCCTAACATGTTAGCTAGTTATCCTTTACCAGCAGCAACAGTAGCTGCTCAATTTGGACCAAGGTTCGGTATGCCTCCTTTCCATATGCCCCATGTTCCTGCAGCACCTGATTTAACCAGAATGCAAGCAGAAAATCAATCAGATAACCCCCTTAACTCCATTGGAACTCTGCCTCCAGATCAATCACGCATCCCAAACCCAAACTCCACCGATCCTTACCAGCAATACCTAGGTCCCCACCAGGTGCAGCAATTAATGCAGGCAATGAACCAGCAAAATGTCAACAGACCAGGTACCAGTGGGAACCAAGATAATCCTCAAAAGCATCATCAGTCAGGTTAG 1644 0.4562 MFSEFNFNFLFHFNSVQHKRSKMNHCVPDFDIHHIDKEDEDYHVHLSKKPSTQQDDEIMELLWQNGQVVMQSQNHRQFRKPPSPAARNHKEIRSSDAENYEHLFMQEDEMASWLFDSMNEDPPFNRQDFSTESLFHPNGGAVIQATASRPPIHPMRKPEQTVNRNHGNVRNEPGTSSSSMIIAAGRESTVVDSCDTPIVTAKTYRLSETIRSTAETGFVSVSTGGKAATTNGGTTMMDMTVTSSPDCSSGSGEPGQRKSELDRKRKRRETEESEFQSEDVVSNLLVAWWAMLKSGRGEQVCGGGKSTTTVGQDVDFECQEGKKQVRGSTSSTKRSRAAEVHNLSERKRRDRINEKMKALQELIPQCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQFMPTMGMGVGMGLGMEMGMNRPVMPFPNMLASYPLPAATVAAQFGPRFGMPPFHMPHVPAAPDLTRMQAENQSDNPLNSIGTLPPDQSRIPNPNSTDPYQQYLGPHQVQQLMQAMNQQNVNRPGTSGNQDNPQKHHQSG* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4080 547 CDD bHLH_AtPIF_like 336 399 - -
Tpr1g4080 547 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 309 544 - -
Tpr1g4080 547 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 23 280 - -
Tpr1g4080 547 Coils Coil 342 362 - -
Tpr1g4080 547 Pfam Helix-loop-helix DNA-binding domain 340 386 IPR011598 GO:0046983
Tpr1g4080 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 402 IPR036638 GO:0046983
Tpr1g4080 547 Gene3D - 331 394 IPR036638 GO:0046983
Tpr1g4080 547 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 23 280 IPR031066 -
Tpr1g4080 547 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 309 544 IPR031066 -
Tpr1g4080 547 SMART finulus 342 391 IPR011598 GO:0046983
Tpr1g4080 547 MobiDBLite consensus disorder prediction 243 276 - -
Tpr1g4080 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Tpr1g4080 547 MobiDBLite consensus disorder prediction 256 275 - -
Tpr1g4080 547 MobiDBLite consensus disorder prediction 490 547 - -
Tpr1g4080 547 MobiDBLite consensus disorder prediction 324 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4080 Tpr-Chr1 46402815 46417819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4080 23 391 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.199 9.94e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g4080 HLH 3.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4080 - - mtr:MTR_1g069155 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4080 1 46402815 46417819 Tpr1g4080 1 46402815 46417819 ECH
Tpr6g3413 6 36863281 36868485 Tpr1g4080 1 46402815 46417819 PCT