Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4078 ATGATGACCACCGCCGATGATCCAGAATACTGGACGCAACTGATGGCCACTTACCTCCTCCGCCCCGAATCCGACCATTCCGATCAACTCCGCTCCATTTCATCTTCTCCCGATTTCAATCTTCATTTTCCTCTCTACATCGACTTCGCAGAATTGTTGGATTATGATCCTCGCATTGCCCATCTCATCTTTTCCCAATCCAATACCTATCTTCAACTATTCGATGAAGCTGCTCTTAGGACTCATAGAATTGTGTTAGGAGAAATGGCTGGTGATGAAAAGAATACTGTGGTTGAGAAAAAGTACATTCACGTTCGGATTAACATCAGTGGTTCTCCCCTTGAATGCCCTGAGACTTTTCCGAGCATAGGACGTGTACGGGTGCAGCACCGAGGGATTCTTCTCACTCTCAAAGGGATAGTAATCAGGTCCGGAGCTATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGCCACAAATGCAAAAACAGGTGCATTGTGTTCTCTTCCCCTTTTGCTCACATTATTATTTATACGGAAAGTATATCGTTTGTTAATCACTCTTGGCGAGGGTTTAAGGTAAGGATACTACTGGTCTTTTGCAAATAA 609 0.4417 MMTTADDPEYWTQLMATYLLRPESDHSDQLRSISSSPDFNLHFPLYIDFAELLDYDPRIAHLIFSQSNTYLQLFDEAALRTHRIVLGEMAGDEKNTVVEKKYIHVRINISGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCHKCKNRCIVFSSPFAHIIIYTESISFVNHSWRGFKVRILLVFCK* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4078 202 SUPERFAMILY Nucleic acid-binding proteins 42 173 IPR012340 -
Tpr1g4078 202 PANTHER DNA HELICASE MCM9 32 170 - -
Tpr1g4078 202 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 32 170 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4078 Tpr-Chr1 46378297 46379789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4078 26 168 Core DNA Replication Machinery Family AT2G14050 56.944 4.92e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4078 K10738 - gmx:100776255 229.18