LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g4056	ATGATAGTTGTAGGACCTCATGATGAATCAATGGTACTTAATCAACTGTTGAAACAAAATCCAGTGGAGGGAATTCTCAAAGAGAAAGTTCAATGTTATTTCAATGTGTTTACAATTGTTGAATTATTAAGGGTCATGGATGTGGATGGAGTTGATGCTATTAATGCTTTAGCAGCTAAGGTCATAAGACTTTGGCAAGTGAATGATTTTAATCGAGTTAATGTGCCTTTTTCTATTGAAATGGTGTTAATGGATTCAGATGGTGCTAAGATTCATGCCACTATTAAAAAAACTCTGATTTACAAGTTTAAACATGAGATAATCGAGGGAAAAGTTTATTCTTTTGAAAATCTTGGTGTGGCAGCTAATACCGGAGCTTATAGGACAACACATCATCCCTACAAACTGAACTTTCAGTTTGGCTCCTTGGTTCAGAGGATGTCCAACTGTGATATTTTGAAGTCTCCATTTACCTTTGTTCCGATTGCTGATATTTTGGGGGGTTGTTATGACACTGATTTTTTAGTTGATGTTATTGGTTTCTTGACTGAGATTGGGCAGGAACGTGAGATCACTAATCATAATGGTAGTACAACAAAGCTTAATGTCATTGCATTGGAAGCTGATGGGCATAAGCTTCAATGTACACTTTTTGGTCCATATGTTGATGAACTTAATACCTTTGTTGGAGCTGGTGATCTAACCAATGTTGTGGTTATTGTTCAGCTTGCTAAAGCTAAGATCTTCCAAGAGAAGATACATATCCAGAATTGCATGAATTGTTCTGTTTTGATATTTAACCCAAGTTGTGACGAAAGTGTAGCCTTAAGGGCAAGTCTTAATGGTGATGATGAGAATCCGTCTCCATTGACCTTTACTCAAGTTAGTGCAAAGTCAAGTGTTCAACCACTTGATGAGTTTCTGCACAATACTCCAAGGATTACCTTGCAAGGTCTCAAGGATGCTACAACTGAATCATCACATGTTGTTGCTGCAACTGTTAAGAGGACTTTAAATCCGGATAGTTATTGGTATACATCATGTTTGTGCGGCAAGGCTGTTGTGCCGGATTCAAAGATGTGGTATTGTGAAAAGTGTAACAGGCATGTTTCAAAGGTTGTTCCTAGGTTCTGTGTCAAAGTCAGAGTCATGGATGATATTGATTCTGCCATTTTTGTGATCTTTGACAAGGAAGTAAGTTCCATATTCAATATGTCTTGTGCTGATATGATTCGAAATGGAGAAAATGATGTTGGTGAAAGAATTGTTCCACCTCAAATTGATGAGACACTGGTTGATCAAACTTGGCTTTTTAAGGTTGAAGTTAAACCTTCTCAGAATCCTAGGTTTGAGCAATCTTTCCGTGTTAGAAAGATTTGTACCGATGAGAGTATAATTAAGCAATTTAAGGACAAGTGGGATAATGAGGATGCTGTGTATCTTAAAAATACAAATGAGGGTGGATCTTTGAGTACTTTGCTGGAAAAAGGGAAAGATGATTATGTAGTTGGGTCGTCAAACGTCCTTTGTGAGGATTTTGAAAATTTTAGTGGAGATTCTGACAAGGGAAAAGGTGGGATTGTTGAACGGACAACTGTTGACGTTTCTCAAGATTTGATGATGAAGTTTTCATCAGCTGTTGTTAATCTTGGCGATGATTTTGATAATACTCCTCTAAGTATTAAGCCAAAGGCATCCATTGTGAAGCAAATTTCATCTGTTGCTATTGTCACTCCAAATACCGTTGTTGATGGTGTGAAGCCAATTAAACCTGATGATAATGCAAAGCCAATCAACTCTGCTGGATCTGTGAATCAAATCAACTCTGCTGGAGCTGCGAAGTCTCAACAATCTGTTGCTGCTCTCAAACCAGTTTACTGTACTACTGTTAATGATTTGAGCCTAACAGCTTCAGCCTCTGTTAGGCCATCTGGACAGCGAAAGAAAATTGTTCCTAAGAGAGTGTCCCCTCAACATGAAGATCGAGATATTGAAGATGAAAATGCTCCTATCAAGTTGTTGAAAAGGGCAGTGAAGATTGAGAAGATTTGA	2052	0.3787	MIVVGPHDESMVLNQLLKQNPVEGILKEKVQCYFNVFTIVELLRVMDVDGVDAINALAAKVIRLWQVNDFNRVNVPFSIEMVLMDSDGAKIHATIKKTLIYKFKHEIIEGKVYSFENLGVAANTGAYRTTHHPYKLNFQFGSLVQRMSNCDILKSPFTFVPIADILGGCYDTDFLVDVIGFLTEIGQEREITNHNGSTTKLNVIALEADGHKLQCTLFGPYVDELNTFVGAGDLTNVVVIVQLAKAKIFQEKIHIQNCMNCSVLIFNPSCDESVALRASLNGDDENPSPLTFTQVSAKSSVQPLDEFLHNTPRITLQGLKDATTESSHVVAATVKRTLNPDSYWYTSCLCGKAVVPDSKMWYCEKCNRHVSKVVPRFCVKVRVMDDIDSAIFVIFDKEVSSIFNMSCADMIRNGENDVGERIVPPQIDETLVDQTWLFKVEVKPSQNPRFEQSFRVRKICTDESIIKQFKDKWDNEDAVYLKNTNEGGSLSTLLEKGKDDYVVGSSNVLCEDFENFSGDSDKGKGGIVERTTVDVSQDLMMKFSSAVVNLGDDFDNTPLSIKPKASIVKQISSVAIVTPNTVVDGVKPIKPDDNAKPINSAGSVNQINSAGAAKSQQSVAALKPVYCTTVNDLSLTASASVRPSGQRKKIVPKRVSPQHEDRDIEDENAPIKLLKRAVKIEKI*	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g4056	683	CDD	RPA1_DBD_B_like	177	269	-	-
	Tpr1g4056	683	Gene3D	-	150	288	IPR012340	-
	Tpr1g4056	683	CDD	RPA1_DBD_A_like	57	144	-	-
	Tpr1g4056	683	Pfam	Domain of unknown function DUF223	80	174	IPR003871	-
	Tpr1g4056	683	SUPERFAMILY	Nucleic acid-binding proteins	313	447	IPR012340	-
	Tpr1g4056	683	MobiDBLite	consensus disorder prediction	653	667	-	-
	Tpr1g4056	683	PANTHER	REPLICATION FACTOR A 1, RFA1	54	414	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Tpr1g4056	683	PANTHER	ANIMAL RPA1 DOMAIN PROTEIN	54	414	-	-
	Tpr1g4056	683	Pfam	Replication factor-A C terminal domain	331	444	IPR013955	-
	Tpr1g4056	683	MobiDBLite	consensus disorder prediction	641	667	-	-
	Tpr1g4056	683	SUPERFAMILY	Nucleic acid-binding proteins	57	148	IPR012340	-
	Tpr1g4056	683	SUPERFAMILY	Nucleic acid-binding proteins	157	285	IPR012340	-
	Tpr1g4056	683	Gene3D	-	300	467	IPR012340	-
	Tpr1g4056	683	CDD	RPA1_DBD_C	319	443	IPR013955	-
	Tpr1g4056	683	Gene3D	-	52	149	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g4056	Tpr-Chr1	45887793	45891845	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g4056	44	407	Core DNA Replication Machinery Family	AT2G06510	22.338	4.66e-14	73.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g4056	-		-	mtr:MTR_4g036240	578.17