Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4050 ATGGCCACTGCTGCCAATCCTATTGTTGGTTCCCAGGTTTGGGTGGAGGACTCCGATGTAGCTTGGATAGATGGCGAGGTCTTGGAGGTTAATGGGGATGAAATAAAAGTCCTTTGCACTTCAGGGAAGACGATTGCTGTTAAAGCTTCCAGTGTTTATCATAAAGATACAGAAGCCCCACCATGTGGAGTTGATGATATGACAAAGCTTGCTTACCTGCATGAACCTGGTGTCCTAGATAATCTAAGATCAAGATATGACATCAATGAAATTTATACTTACACTGGGAATATATTAATCGCTGTGAACCCTTTCATAAAGCTTCCTCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGGCTTTGGTGAGCTAAGCCCACATCCTTTTGCTATTGCTGACTCAGCATATAGGCTTATGATCAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGTAAAACAGAAAGCACAAAGTTACTTATGCGCTACCTTGCTTACATGGGAGGGAGAGCTAATGTTGCCGAAGGTAGAACTGTTGAGCAGAAAGTCCTGGAGTCCAATCCTGTTCTAGAAGCTTTTGGAAATGCAAAGACCGTTAGAAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAAGGGAAGAATTTCTGGAGCTGCTATCAGGACTTACCTGCTGGAAAGATCACGTGTTTGCCAGTTGTCGGATCCAGAGAGGAATTATCACTGTTTCTATATGCTTTGTGCTGCACCTCCAGAGGTTGTTCAGAAGTACAAATTAGGAAACCCAAGAACCTTTCATTATCTAAATCAAACAAATTGCTATGAGTTGGAAGGGTATGATGAATTTAAAGAATATTGTGATACAAGGAGAGCAATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGAAGCAATATTTCGAGTGGTTGCTGCAATTTTACATCTTGGCAACATTGAATTTTCAAAAGGAAAGGAAATGGACTCGTCTATGCCCAAAGATGAAAAATCTAAGTTTCACCTACAGACTGCGGCTGAACTTTTCATGTGTGATGCAAAGGCACTAGAAGATTCTCTTTGCAAGCGTGTAATTGTTACTCGTGATGAAACTATTATAAAATGCCTGGATCCCGAAGCTGCTACACTGAGCCGAGATGCTTTAGCTAAGGTTGTGTATTCGAGGTTGTTTGACTGGCTGGTTGATAAAATTAATAATTCAATTGGTCAGGATCCTGACTCAAAGTCCTTAATCGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGTCTAACAGTTTTGAGCAATTCTGTATTAATTTGACCAATGAAAAGCTCCAGCAACATTTTAATCAGGATTAG 1401 0.4047 MATAANPIVGSQVWVEDSDVAWIDGEVLEVNGDEIKVLCTSGKTIAVKASSVYHKDTEAPPCGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAGFGELSPHPFAIADSAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRANVAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCAAPPEVVQKYKLGNPRTFHYLNQTNCYELEGYDEFKEYCDTRRAMDVVGISSEEQEAIFRVVAAILHLGNIEFSKGKEMDSSMPKDEKSKFHLQTAAELFMCDAKALEDSLCKRVIVTRDETIIKCLDPEAATLSRDALAKVVYSRLFDWLVDKINNSIGQDPDSKSLIGVLDIYGFESFKSNSFEQFCINLTNEKLQQHFNQD* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4050 466 Gene3D Kinesin motor domain 65 439 IPR036961 -
Tpr1g4050 466 Gene3D - 253 311 - -
Tpr1g4050 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 465 IPR027417 -
Tpr1g4050 466 PANTHER MYOSIN 7 465 - -
Tpr1g4050 466 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tpr1g4050 466 SMART MYSc_2a 57 466 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g4050 466 Pfam Myosin head (motor domain) 64 465 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g4050 466 Gene3D - 440 465 - -
Tpr1g4050 466 ProSiteProfiles Myosin motor domain profile. 62 466 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g4050 466 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g4050 466 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g4050 466 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g4050 466 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g4050 466 PANTHER MYOSIN-14 7 465 - -
Tpr1g4050 466 Gene3D Myosin VI head, motor domain, U50 subdomain 313 423 - -
Tpr1g4050 466 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4050 Tpr-Chr1 45815226 45819592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4050 9 465 Myosins gene family AT4G28710 82.276 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4050 K10357 - gmx:100791070 875.544