Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4031 ATGGCGATCGAAAATTCCGGTGGAATCCAAGTCCAAGGAATGCAATTCTCCTACGACGGACTTCAACCACCGCTTTTCCTCGATTTCAACCTTCACGTCTCCCCCGGATCTCGTTGCCTCCTCGTCGGTGCCAATGGATCCGGGAAAACGACTTTGTTGAAGATTCTGGCTGGGAAGCATATGGTTGGAGGAAGAGACGTTGTCCGTGTGTTGAATTCTTCTGCTTTTCATGATACTCAGCTTGTTTGTAGTGGAGATCTTGCTTATTTGGGTGGATCTTGGAGTAAAAACATTGGCTGCGCTGGAGACATTCCACTCCAGGGAGACTTCTCTGCTGAACATATGATATTCGGTGTCGAAGGCGTTGATCCTAACAGGAGAGATAATTTGATTGACCTGCTTGATATAGATCTGCAGTGGCGAATGCATAAGGTATCCGATGGCCAGCGGCGTCGAGTACAAATCTGTCTAGGTCTTCTTCATCCGTACAAGGTTCTCTTGCTGGATGAGGTTACAGTTGACCTGGATGTTGTTACTCGAATGGATTTATTGGAATTCTTCAAGGAAGAATGTGAGCAGAGAGAAGCTACAATTGTATATGCCACTCACATTTTTGATGGACTAGAGACATGGGCAACTCATTTGGCATACATACAAGAAGGCGAACTGAGGAGAGCAGAAAAAATATCAGATGTTAACGAGTTGAAATCTTCAACTAATCTGCTGTCTGTTGTTGAGTCCTGGCTCCGTGCTGAAACAAAACTTGAAAAGAAGAAACCTGTCAACAATACATCTCAGGCGAATCCTTTTGCTAGCTCTCCGTTCTTTTCATCCAGACACATGGCATACTATCGATAA 858 0.4476 MAIENSGGIQVQGMQFSYDGLQPPLFLDFNLHVSPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVRVLNSSAFHDTQLVCSGDLAYLGGSWSKNIGCAGDIPLQGDFSAEHMIFGVEGVDPNRRDNLIDLLDIDLQWRMHKVSDGQRRRVQICLGLLHPYKVLLLDEVTVDLDVVTRMDLLEFFKEECEQREATIVYATHIFDGLETWATHLAYIQEGELRRAEKISDVNELKSSTNLLSVVESWLRAETKLEKKKPVNNTSQANPFASSPFFSSRHMAYYR* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4031 285 Pfam ABC transporter 28 172 IPR003439 GO:0005524
Tpr1g4031 285 PANTHER ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED 5 285 - -
Tpr1g4031 285 SMART AAA_5 35 221 IPR003593 -
Tpr1g4031 285 Gene3D - 7 265 IPR027417 -
Tpr1g4031 285 PANTHER ABC TRANSPORTER I FAMILY MEMBER 21 5 285 - -
Tpr1g4031 285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 9 245 IPR003439 GO:0005524
Tpr1g4031 285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4031 Tpr-Chr1 45383232 45387250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4031 6 278 Calmodulin-binding Proteins AT2G36910 23.509 1.52e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4031 K12608 - gmx:100788503 482.256