Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4030 ATGGATTCTGCTAGGAGTTGGCTTCAGAAGTTGCAGCCTCGTGATAAACTGAAGGCAAAGAAGAGAGATGAAGATGGTAATAATGATGGAGATGGAGATGGAGATTCGACATCACCTGTCGATGAAGCATTGCTTTCTGATGTCACCAAACAGAAGGTTGCCGCGGCAAAGCAGTATATTGAAAATCATTACAAGGAGCAAATGAAGAACCTTCAGGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAAGAGGATCAAAGCAACTTGCTTAAGTTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGGCCAAGATGGGCGTTGATGATTTTGAGTTATTAACTATGATTGGAAAAGGTGCATTTGGAGAGGTCAGAGTCTGCAGAGAGAAGACTACTGATCATGTATACGCAATGAAAAAACTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACACGTCAAAGCGGAAAGGAATCTCCTCGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTACTGTTCTTTCCAGGATGATGAGTATCTTTATCTTATTATGGAGTATCTACCGGGTGGAGATATGATGACTCTACTTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAGATTTTATGTTGGAGAAACTGTTCTGGCTATTGAATCTATACACGAGCACAATTATATACACAGGGATATCAAGCCTGACAACTTATTACTTGATAGATATGGACACTTGAGACTGTCTGACTTTGGACTTTGTAAACCATTAGACTGTAGTCAGCTTGAAGAAAAGGATTTTTCTGTTGGTCAGAATGCAAATGGATCTACACATAATGAGACCGGTTCAACTCCAAAACGCACACAACAAGAACAACTGCAAAACTGGCAAAAGAACAGGAGGACACTTGCTTATTCCACAGTTGGTACACCGGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGGTATGGGATGGAATGTGATTGGTGGTCACTCGGTGCTATCATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGACAACATGTAGGAAGATAGTGAACTGGAAATCTCACTTGAAATTTCCTGAGGAAGCTGGGCTATCGCCAGAGGCTAAAGATCTTATTAGTAGACTTTTATGTAATGTCAATCATAGGCTGGGATCAAACGGTGCTGATGAAATAAAGGCTCATCCGTTCTTCAATGGTGTTGAATGGGATAAACTATATCACATTGAAGCTGCATTTATACCTGAGGTCAATGATGAATTAGATACTCAGAATTTTGAAAAGTTCGATGAGGCTGACTTCGAAACTCGACCGTCATCAAAAGCTGGTCCATGGAGGAAGATGATTTCATCTAAGGACTTCAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTCAGCGATTATCAAGTTCCTGGGATGGCTGAACTGAAGAAGAAACCCTCCAAATCAAGGAGACCATCCATTAAGTCACTTTTTGATTCCGATTCAGAGGTGTCTGAGGTTTCTGATACATCTGCAAGTGATCAACCTGTTCAAGGAAGCTTTTTAAACCTCTTGCCGCCCAAGTTAGAGCCATCTAATAGCGAGAGGAATCTTACTCATGAGTCCTAA 1683 0.4076 MDSARSWLQKLQPRDKLKAKKRDEDGNNDGDGDGDSTSPVDEALLSDVTKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQSNLLKFLEKKETEYMRLQRAKMGVDDFELLTMIGKGAFGEVRVCREKTTDHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHEHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSQLEEKDFSVGQNANGSTHNETGSTPKRTQQEQLQNWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMTTCRKIVNWKSHLKFPEEAGLSPEAKDLISRLLCNVNHRLGSNGADEIKAHPFFNGVEWDKLYHIEAAFIPEVNDELDTQNFEKFDEADFETRPSSKAGPWRKMISSKDFNFVGYTYKNFEIVSDYQVPGMAELKKKPSKSRRPSIKSLFDSDSEVSEVSDTSASDQPVQGSFLNLLPPKLEPSNSERNLTHES* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4030 560 Gene3D Transferase(Phosphotransferase) domain 1 206 438 - -
Tpr1g4030 560 SUPERFAMILY Protein kinase-like (PK-like) 97 469 IPR011009 -
Tpr1g4030 560 MobiDBLite consensus disorder prediction 516 538 - -
Tpr1g4030 560 Pfam Protein kinase C terminal domain 439 483 IPR017892 GO:0004674|GO:0005524|GO:0006468
Tpr1g4030 560 SMART serkin_6 122 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4030 560 CDD STKc_NDR_like 120 484 - -
Tpr1g4030 560 MobiDBLite consensus disorder prediction 282 309 - -
Tpr1g4030 560 SMART pkinase_C_6 421 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
Tpr1g4030 560 PANTHER SERINE/THREONINE-PROTEIN KINASE 43 532 - -
Tpr1g4030 560 Coils Coil 64 84 - -
Tpr1g4030 560 MobiDBLite consensus disorder prediction 501 515 - -
Tpr1g4030 560 MobiDBLite consensus disorder prediction 1 46 - -
Tpr1g4030 560 MobiDBLite consensus disorder prediction 500 560 - -
Tpr1g4030 560 ProSiteProfiles Protein kinase domain profile. 122 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4030 560 Gene3D Phosphorylase Kinase; domain 1 120 449 - -
Tpr1g4030 560 MobiDBLite consensus disorder prediction 9 28 - -
Tpr1g4030 560 Pfam Protein kinase domain 123 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4030 560 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 43 532 - -
Tpr1g4030 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Tpr1g4030 560 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Tpr1g4030 560 ProSiteProfiles AGC-kinase C-terminal domain profile. 421 493 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4030 Tpr-Chr1 45371495 45381557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4030 1 518 AGC Kinase Gene Family AT2G20470 78.695 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Tpr1g4030 Pkinase 3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4030 K08790 - gmx:100820558 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4030 1 45371495 45381557 Tpr6g3319 6 35811376 35818723 PCT