Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4029 ATGATGAAAGTGGGATTTGAAGTCCTTCATGCAAATCCAAACATGATTCATCCACACATGCATGAAACATGGGACTACACAATCATTACAAATGACTTATTATTGCCACCTCCAATCCAAACAAACCCTTATCCAAAATCACTAACAGAAAATCATTCCTTAAACTTAGGACAAAATAATGAGGTATGTGATTGGGTTGAACACATTACTAAACACTTCGTTGAAGATCACTTACCACTAAACACTTCAGATAATAATATTCATAATCTTCACATTCAAACAAACAACAACTTAGATAATAATAATAATGATTATGAATGTGATCAAGGGTTGAATTTGATAACCCTTTTAATGGAATGTGCTGTGGCAATTTCAGTTGAAAATCTTGGTGAAGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTTCAAAACATCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAAGCTATGATTAGTAGAGTCATGAATTCATGGCTTGGAGTATGTTCACCTTTGATTGATCATAGAACAATTCACTCAGCACTACAAGTGTTCAACAATATTTCACCTTTCATCAAATTTTCACATTTCACTTCAAACCAAGCGATTCTCGAAGCGGTGAATCGTTGTAATGACATTCACATAATTGATTTGGATATCATGCAAGGTCTTCAATGGCCGGCTTTTTTTCACATACTCGCTACTCGAATGGAGGGTCGACCAAATGTCAGAATGACGGGGATGGGAGCGTCGATGGAGCTTCTTGTTGAGACGGGGAAAAACCTCTCGAATTTCGCGAGAAGGCTTGGTTTGTGTTTGGAATTTTACCCTATAGCATGTAAATTCGGCGAAGTTGTTGATGTTTCCATGTTGCAAATTAGGCCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCAGATTGGAAAACTTTGAGACTTCTTGAAGAATTGGAACCAAGAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGTTCATTTTTGGACCGTTTTGTTGGTTCATTGCATTACTATTCAACACTTTTTGATTCTCTTGGATCATATTTGCATAGTGATGATGCTAATAGAAACATTGTTGAACATAATCTTCTCTCTAAAGAGATTAACAATATATTGGCAATAGGAGGACCTAAGAGAAGTGGTGAAGAAAAATTTAGGCTTTGGAGAAATGAGCTTGTTGCAAGTAATAGTTTTGAGCAAGTTTCAACGAGTTCTAATTCAATGGCTCAAGCACAATTGATATTGAACATGTTTTCACCAACTCATGGTTATAGTCTTTCTCAAGTTGATGGCATGTTAAGGCTTGGATGGAAAGATACTAGTTTGTATACAGCTTCTTCTTGGACTTGTAGAACTTCTAGGTAG 1428 0.3613 MMKVGFEVLHANPNMIHPHMHETWDYTIITNDLLLPPPIQTNPYPKSLTENHSLNLGQNNEVCDWVEHITKHFVEDHLPLNTSDNNIHNLHIQTNNNLDNNNNDYECDQGLNLITLLMECAVAISVENLGEAHRMLLELTQLASPFKTSCAERVVAYFAKAMISRVMNSWLGVCSPLIDHRTIHSALQVFNNISPFIKFSHFTSNQAILEAVNRCNDIHIIDLDIMQGLQWPAFFHILATRMEGRPNVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPRIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDANRNIVEHNLLSKEINNILAIGGPKRSGEEKFRLWRNELVASNSFEQVSTSSNSMAQAQLILNMFSPTHGYSLSQVDGMLRLGWKDTSLYTASSWTCRTSR* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4029 475 Pfam GRAS domain family 113 470 IPR005202 -
Tpr1g4029 475 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 471 IPR005202 -
Tpr1g4029 475 ProSiteProfiles GRAS family profile. 104 470 IPR005202 -
Tpr1g4029 475 PANTHER OS05G0485400 PROTEIN 15 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4029 Tpr-Chr1 45364379 45366082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4029 108 473 GRAS Transcription Factor Family AT3G54220 54.155 3.54e-131 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr1g4029 GRAS 6.4e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4029 - - cam:101494668 806.594