Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4022 ATGAAGTTCCTACGCTCAGGGGAGCAGCAATTGGGAGGAGGAACAGATGAAACCTACCCTTCATCTCATCAATCTCTTGTCACCAATCATTTTTTCTCAGCAAGTAGTGCAAATTCCTTCCTACCTGGAAAACTTGATGATGATGATGATCATCATCATCATCTCAAGCCCGACACCGGCAATATAGAAGAAGCAGAATTATCTTTGCGTGAGAGTGGCGGCGTATTGAACTATGAGGAAGCTAGAGCACTGCTAGGAAGATACGAGTATCAAAAAGGAAATCTAGTATCTGCTTTACATGTCTTTGAAGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCAAGAAACAAAGAACGCCGCAAGAAACATTCCCATAATCATGGTGAACCGGAAATGTCTATACATTCTGTCGGCTTACTGTTGGAATCACTCTTCCTAAAAGCAAAATCTTTGCAGGCTCTTGAAAGGTTTAAAGAAGCTGCACAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTACCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTTGAGCTACTTCCAGAATTATGGAAGCTTGCTGATTGTCCTCGTGAAGCTACTTTGTCTTATCGGCGAGCCCTCCTTCATCAATGGAATCTTGATGCACGGACGACATCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGAGAAGTAATGCCCCCGAATCTGCGTTCCCAAATGGATGGCTCGTTTGTACCAGGAAACAACATAGAGGAAGCTATACTTCTTCTAATGATTTTGCTGAGAAAAGTCTCTCTCAAGAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCGGTTTCGGGAGATTTATCGAGTTTAGCTAATAATTTGGAAGAATTGCTCCCTGGTATTATCCATCGAAGTGAAAGATTCCACACTCTAGCTCTTTGTTATTATGGAGCAGAAGAAGGTGTAAGCTTTTCTAAAAGAGCGGTTGAGAGTTTGGACGGAAGATGTAAGCAGTTAGAACATGTTGCGAAATTCTATCATGGTGTTTCATTATCGGCACATTCGAAATTAGCCGTTTCTGATTTCGAGAAGTTTAAAAGACAATCAGAGGCACTTCAAGCATTGGAAACGGCTGGCAGAATGACCGGAATGAAAGACCCTCTAGTACTATACCATCTCAGTTTAGAATATGCGGAACAAAGGAAGTTGGATGAGGCACTTTATTATGCAAAGTGCGTCATAAAACTGGAAGGTGGTTCTAATGTTAAAGGATGGTTACTGTTGGCTCGGATATTATCTGCTCGAAAACAGTTTTTGGAAGCCGAATCTATTATTAATGCTGCTTTGGATCAGACTGGCAAATGGGATCAAGGTGATTTGCTGCGAACAAAAGCTAAGATTCAAATTGCACGGGGCCAGTTAAAGAATGCCATTGAGACATACAGTCAGCTTCTTGCTGTTCTTCAAATTCAGAGAAAAAGTTTTGGTTCTTGGAAGAAGCTATATAAGGACAACCGAGATCTTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGTCTTTCCCAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCTAAGGCCATCAAACCATACTCCGCTTCTAGATGTCATGCACTAGGTATAATGTACGAAGCAAAGGGCCTTTACAATGAGGCTCTGAAAGCTTTTGGTGATGCTTTGAACATTAAGCCTGGCCATGTTCCCAGCTCAATATCCACTGCTGTAGTACTTAGACGTTGCAGTAACAAATCAAATCCGGCAGTCAGAAGTTTTTTCATGGATGCACTACGGCATGACAGATTGAATGATTCTGCTTGGTATAATCTTGGCCTTTATCACAAGGCTGAGGGTACAGTCTCATCATTGGTTGAAGCTACAGAATGTTTTCAAGCAGCACAGTCTCTTGAAGAATCGACTCCACTCGAACCTTTCAGATGA 2061 0.4144 MKFLRSGEQQLGGGTDETYPSSHQSLVTNHFFSASSANSFLPGKLDDDDDHHHHLKPDTGNIEEAELSLRESGGVLNYEEARALLGRYEYQKGNLVSALHVFEGIDIGVVTPKIKIALSRNKERRKKHSHNHGEPEMSIHSVGLLLESLFLKAKSLQALERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLHQWNLDARTTSKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPGNNIEEAILLLMILLRKVSLKRIEWDPSILDHLSFALSVSGDLSSLANNLEELLPGIIHRSERFHTLALCYYGAEEGVSFSKRAVESLDGRCKQLEHVAKFYHGVSLSAHSKLAVSDFEKFKRQSEALQALETAGRMTGMKDPLVLYHLSLEYAEQRKLDEALYYAKCVIKLEGGSNVKGWLLLARILSARKQFLEAESIINAALDQTGKWDQGDLLRTKAKIQIARGQLKNAIETYSQLLAVLQIQRKSFGSWKKLYKDNRDLARNLEVEIWHDLAHVYISLSQWHDAEVCLSKSKAIKPYSASRCHALGIMYEAKGLYNEALKAFGDALNIKPGHVPSSISTAVVLRRCSNKSNPAVRSFFMDALRHDRLNDSAWYNLGLYHKAEGTVSSLVEATECFQAAQSLEESTPLEPFR* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4022 686 Pfam Tetratricopeptide repeat 575 606 IPR019734 GO:0005515
Tpr1g4022 686 Gene3D Tetratricopeptide repeat domain 540 682 IPR011990 GO:0005515
Tpr1g4022 686 SMART tpr_5 448 481 IPR019734 GO:0005515
Tpr1g4022 686 SMART tpr_5 484 517 IPR019734 GO:0005515
Tpr1g4022 686 SMART tpr_5 644 680 IPR019734 GO:0005515
Tpr1g4022 686 SMART tpr_5 574 607 IPR019734 GO:0005515
Tpr1g4022 686 SMART tpr_5 540 573 IPR019734 GO:0005515
Tpr1g4022 686 SMART tpr_5 146 179 IPR019734 GO:0005515
Tpr1g4022 686 SMART tpr_5 413 446 IPR019734 GO:0005515
Tpr1g4022 686 MobiDBLite consensus disorder prediction 1 20 - -
Tpr1g4022 686 SUPERFAMILY TPR-like 485 658 IPR011990 GO:0005515
Tpr1g4022 686 Gene3D Tetratricopeptide repeat domain 77 538 IPR011990 GO:0005515
Tpr1g4022 686 ProSiteProfiles TPR repeat profile. 574 607 IPR019734 GO:0005515
Tpr1g4022 686 PANTHER PROTEIN NPGR2 344 686 - -
Tpr1g4022 686 PANTHER PROTEIN NPGR2 1 346 - -
Tpr1g4022 686 SUPERFAMILY TPR-like 390 513 IPR011990 GO:0005515
Tpr1g4022 686 PANTHER PROTEIN NPG1 344 686 IPR043376 -
Tpr1g4022 686 PANTHER PROTEIN NPG1 1 346 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4022 Tpr-Chr1 45276570 45282135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4022 56 686 Calmodulin-binding Proteins AT4G28600 55.344 0.0 699
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4022 1 45276570 45282135 Tpr6g3326 6 35861576 35868820 PCT