Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4019 ATGGCCTCAAAAGCCTTAACCACTGGTTCTCACTCCCGAAATGGACACCGTTTCTCAGTGTTTGATGACTCGGATGAGGAAAATGGAGACTTCAATCAGCAGCAACAGAAACACAATAACCATGCTTTCTCTTTGGATGGAAGTGTATCTAGTAAGGATTTTGAAGAACAGAAACCATTCAGCTATAATGCGGATAAAGAGAAAGGAAAGCGAGAAAAAAGAAGTCTTATGAGCAATGACATAGGAGAAGATGATTACCTTTTGGAGGAGTCAAGGCAACCGTTATGGCGCAAAGTCCCAATAGCTTCGAGCCTAATCAATCCATATCGTATAGTCATAGTCATGCGTCTTGTTGTCCTAGTTTTCTTCTTCCACTTCCGCATCACAACTCCGGTTCACGATGCATTCGCCTTATGGATAATCTCCGTGGTCTGCGAAATATGGCTCTCTTTGTCTTGGATAGTAGACCAGTTCCCCAAATGGTTCCCCATGACTCGCGAAACTTACTTGGAGCGCTTGTCACTGAGATTCGAGCGCGAAGGGGAGCCGAACCTTTTAGCCTCAGTTGATGTCTTTGTTACCACTGCAGACCCTTTGAAGGAACCGCCTATTATAACAGCAAACACAGTTCTATCAATCTTGTCTGTTGATTATCCTGTTGACAAAGTTAGCTGCTATGTCTCCGATGACAGTGCATCTATGCTTCTCTTCGATACTTTGTCACAAACTTCTCAGTTTGCAAGAATATGGATTCCATTTTGTAAGAAGTATAACATTGAGCCAAGGGCACCCGAGTCTTATTTTTCTCATAAAGTTGATTACTTGAAAGACAAGGTACATCCATCATTTGTAAAGGATCGCAGGGCTATGAAGAGAGAGTATGAAGAATTCAAGGTGAAAATTAATGTACTTGTTGCAAAGTCTCAGAAAAAACCAGAAGAAGGGTGGGTGGTGCAAGATGGTACTCCATGGCCTGGGAACAACACTGACGATCATCCAGGAATGATTCAGGTGTGTCTGGGAAGTGCTGGTGCTCTTGACAATGAAGGCAAGGAGCTGCCACGGCTTGTGTATGTTTCGCGCGAGAAATGTTCTGGCTATCAACACCATAACAAAGCTGGAGCCATGAATTCTCTGCTTCGAGTTTCTGCTGTGCTTAGCAATGCACCTTTTGTGTTGAATCTGGATTGCGATCAATACATCAATAATAGCAAGGCTCTTAGGGAGGCTATGTGCTTCCTAATGGACCCTCTACTTGGAAAGAAGACTGCTTATGTTCAATTTCCGCGAAGGTTTGATGGAATCGACGGCAACGACCGATACGCTAATCACAACACTGTATTCTTTGATATCAATATGAAATGCCTTGATGGAATTCAAGGTCCCGTGTATGTTGGTACTGGATGTGTGTTCAACAGGCAGGCATTATATGGCTACAAGCCACCATCTGAGAAAAGGCGAAAGACAAGCTTTTCATGCTGCTGCTGTTGTTCTGGTGAAGAGATTGATGATGGGCTTGAAGACTATGATGAGCAAGAGGAATCAACCTTTATGTCCGTCAAAGTTTTTGAGAAAAAGTTCGGAGAGTCACCGGTTTTCATTGCTTCTGCATTGATGGAAGATGGTGGACTTCCAAAAGGAGCTAATACTCGAATACTGATGAAGGAAGCAATTCATGTTATAAGTGTTGGATATGAAGAGAAAACCGAATGGGGCAAAGAGATAGGGTGGCTTTATGGTTCAGTCACAGAAGACATTTTGACAGGGTTTAACATGCATTGTAGAGGATGGAAATCAGTGTACTGCATGCCTATAAGAGCAGCTTTTAAAGGATCTGCTCCTATAAACCTATCAGACAGATTACACCAAGTTCTGAAATGGGCTTTGGGTTCTACTCAGATTTTCTTTAGTGGCTATTGTCCATTGTGGTATGGCTATAGTGGAAAACTGAAATGGCTTCAAAGGCTCGCTTACACGAATGCTATCGTTTATCCTTTCTCTTCCATCCCTCTTCTGGTGTACTGCACAATTCCAGCTATCTGTCTTCTAACTGGAAAGTTCATCCTCCCCACTATGACAAACCTTGCAAGCATTTGGTTGATGGCTCTATTTATCTCCATCATTTTAACTTGTGTGTTAGAGCTTCGTTGGAGTAAGGTTAACATTCAAGACTGGTGGCGCAACGAACAATTCTGGGTCATTGGAGGTGTTTCTGCACATCTATTTGCAGTGTTTCAAGGCCTCCTTAAAGTTGCAGGACTTGGCACTAATTTCACCGTGAGAACGAAATCAGCAGACGACACTGCATTTGGTCAGCTCCATCTCTTCAAGTGGACTAGTCTTCTCATCCCTCCAACAAGTATTGTAATCTTGAATGTGGTGGGAATTGTGGCTGGAATCTCTGAAGCCATTAACAGTGGCTATAATTCATGGGGACTTTTATTTGGGAAGGTTTTTTTCTCTTTTTGGGTCATTGTTCACTTGTATCCTTTCCTCAAAGGTCTACAAGGAAGGCAAAACAGAACACCTATCATAGTAGTTCTCTGGGCAACACTTCTAGCATTGATTTTTTCGATGATTTGGGTGAGAATTGATGTTTTCTTGCCCAACAAAATAGGTCCTGTACTCACACAATGCGGGGTAGAATGCTAA 2652 0.4265 MASKALTTGSHSRNGHRFSVFDDSDEENGDFNQQQQKHNNHAFSLDGSVSSKDFEEQKPFSYNADKEKGKREKRSLMSNDIGEDDYLLEESRQPLWRKVPIASSLINPYRIVIVMRLVVLVFFFHFRITTPVHDAFALWIISVVCEIWLSLSWIVDQFPKWFPMTRETYLERLSLRFEREGEPNLLASVDVFVTTADPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDSASMLLFDTLSQTSQFARIWIPFCKKYNIEPRAPESYFSHKVDYLKDKVHPSFVKDRRAMKREYEEFKVKINVLVAKSQKKPEEGWVVQDGTPWPGNNTDDHPGMIQVCLGSAGALDNEGKELPRLVYVSREKCSGYQHHNKAGAMNSLLRVSAVLSNAPFVLNLDCDQYINNSKALREAMCFLMDPLLGKKTAYVQFPRRFDGIDGNDRYANHNTVFFDINMKCLDGIQGPVYVGTGCVFNRQALYGYKPPSEKRRKTSFSCCCCCSGEEIDDGLEDYDEQEESTFMSVKVFEKKFGESPVFIASALMEDGGLPKGANTRILMKEAIHVISVGYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPIRAAFKGSAPINLSDRLHQVLKWALGSTQIFFSGYCPLWYGYSGKLKWLQRLAYTNAIVYPFSSIPLLVYCTIPAICLLTGKFILPTMTNLASIWLMALFISIILTCVLELRWSKVNIQDWWRNEQFWVIGGVSAHLFAVFQGLLKVAGLGTNFTVRTKSADDTAFGQLHLFKWTSLLIPPTSIVILNVVGIVAGISEAINSGYNSWGLLFGKVFFSFWVIVHLYPFLKGLQGRQNRTPIIVVLWATLLALIFSMIWVRIDVFLPNKIGPVLTQCGVEC* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4019 883 MobiDBLite consensus disorder prediction 58 74 - -
Tpr1g4019 883 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 3 883 - -
Tpr1g4019 883 MobiDBLite consensus disorder prediction 33 47 - -
Tpr1g4019 883 MobiDBLite consensus disorder prediction 1 15 - -
Tpr1g4019 883 MobiDBLite consensus disorder prediction 1 74 - -
Tpr1g4019 883 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 299 480 IPR029044 -
Tpr1g4019 883 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 883 - -
Tpr1g4019 883 Pfam Cellulose synthase 501 873 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tpr1g4019 883 Pfam Cellulose synthase 189 500 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tpr1g4019 883 SUPERFAMILY Nucleotide-diphospho-sugar transferases 343 698 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4019 Tpr-Chr1 45259057 45263586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4019 25 883 Cell Wall Biosynthesis AT5G17420 65.163 0.0 1210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4019 K10999 - gmx:100777278 1464.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4019 1 45259057 45263586 Tpr1g4019 1 45259057 45263586 ECH