Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4018 ATGTCGAAGAGAGGTCGTGGTGGTTCCGCCGGGAACAAGTTCCGTATGTCACTGGGTCTTCCAGTGGCGGCGACGGTGAATTGCGCAGACAACACTGGAGCAAAGAATCTCTACCTCATTTCCGTCAAGGGAATCAAGGGTAGACTTAACCGTCTTCCTTCAGCTTGCGTTGGTGACATGGTGATGGCCACCGTCAAGAAAGGAAAACCCAATCTCAGGAAAAAGGTTTTACCTGCCGTCATCGTTCGTCAGCGTAAACCATGGCACCGAAAGGATGGCGTCTTCATGTATTTTGAAGATAATGCTGGTGTTATTGTGAACCCTAAGGGTGAAATGAAAGGGTCTGCTATCACTGGACCAATTGGTAAGGAGTGTGCTGATCTTTGGCCAAGGATTGCAAGTGCTGCCAATGCCATTGTATGA 423 0.4894 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYLISVKGIKGRLNRLPSACVGDMVMATVKKGKPNLRKKVLPAVIVRQRKPWHRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4018 140 Hamap 50S ribosomal protein L14 [rplN]. 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Tpr1g4018 140 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
Tpr1g4018 140 Pfam Ribosomal protein L14p/L23e 22 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Tpr1g4018 140 Gene3D Ribosomal protein L14 1 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Tpr1g4018 140 SUPERFAMILY Ribosomal protein L14 11 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Tpr1g4018 140 SMART Ribosomal_L14_2 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Tpr1g4018 140 PANTHER 60S RIBOSOMAL PROTEIN L23 1 140 - -
Tpr1g4018 140 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4018 Tpr-Chr1 45241520 45243970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4018 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 96.429 1.05e-97 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4018 K02894 - zju:107434236 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3346 6 36110288 36111512 Tpr1g4018 1 45241520 45243970 PCT