Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4016 ATGTTTAGGTCTTCTTGCTCAATTACTCATAAATCATCATATGGTGTATTTGTTTCTATCTTTTACATTTGGCTGTTTGTAGCAAAAGTAACTGTTGGTTGGTTAAAAATGGCGCCAAGGCCAAATCCAAAAATAGCAGCGGCCTTAACTGCAATGGGAGCTCTTGGGATTGATGAAGCAAAAGTAAAATCGGTGTTAAAAAAGCTCCTCAAATTGTATGATAAAAATTGGGAACTTATCGAGGAAGAGAACTACAGAGCTCTTCTGGATGCTATATTTGAAGAAGGCGATAATTTTGAGGAGCCAGAACAGCAAAACAAAAACAAGAGAGTTATTAATGAAGAAGAGACGGAGGCTGAAAAAGCTCCGATAAATGGTGAATCTGCTCGACCTTTGAAAAGATTGAGATTAAGAGGAGAGAACAATTCCCCTAGTTCAGCTTCTTCCCCATCAAAGAAGCCTCACATAGAAAATGCCAATGCACTTCAGGGATGCTCTGCACAGCAGTCTCAAAACAAAGCAGTGTCATCTGAGGAAAATGTGAGGATTGCAGGACGTCCAAGTCCTATACGGAATACCAGTTCTGACAGGGGAAAGCAACCTGCATTGCCTCAAGTTTCTCTTGGAGGGAGAAGACATGTATCTGAAAGAGCATCTCCATCTAAACATCCAACAGTTGAACCTGGAAAGTTTCTGTTACCAAGCTACCAAACGCCTCATGCTTATACAATGACGGAACCTAAACCGGAGCCTGTTGATGAAGCTGATTATGAGGTTCCCATTGCAATGGTTGCCCCTGAACCATCAAGTTTAAGGCACTCGTCAATGAAGAATGGCATTACTAGAAAGCAGCAAGGTGGCAATGTCTCTATGACGTCATCAAATCACAACACAAATAAAGAAGGGGCTTCTGATGTTGTGATAGCCTCTTCAGCTCAGGGAGAAGTTAAACTTTCTCTGAGCTGCAGCTCAGCACTTCAGGGACCAAATTTTCGCATGCCTACTCAGGAACAACTTCTAAAGATGATGGAGGATAAATGTCTGCGATCATATAAAATTACTGACCCAACTTTTTCGGCCACAAAAATGTTGAGAGATATATGTGATTGCGTGTTGGAATTTACTACTGATTCAAATGATGATTCACAAGAAGGTTCTAGGACAAGATCAAGCATTGATGTGTCAAAGGAATTAGATGTTAATGGCACTGCCGGCATTGGGGGCAGTAAGGATTTGGACACAGGTTCTCACTCATCAAATGGATCACTCCAAGTTAATTCTTTTTCTGCCTTGGTTTCACCTCGAGGCCCCTTTTTGCCAGCCCATCAGAGTAGTTTGGATGATGCTGTACTAGTTTCTATGATGGACAAGACAGATGATATTCCACAAAGTGATGTTAGATTGCAGCCGGAGGATCCCATGTCTACAAATTCACTCAGTTTAGTGGTTGTTCCAAATCATCAGCTTACAGCAGATGATATAAGGTCTTTTCATGACGTTAACGACCTTACAAAAGGAGAAGAGAATAATCAAATTTCATGGGTGAATGAAACTACTGATGATTTCCCACCACCTTTCAGCTACATACCCCAAAACCTTGTGTTCCAAGATGCATGTGTCAAAATTTCTTTATCTCGTATTGGGGCCAAGGACTGCTGTTCCTGTATCGGAAGTTGTATCTTGTCAACAAATTGTGCCTGTATAGATAAAACTGGGGGCGGATTTGCATATACTGCTCGAGGCCTAATGAAGGAAGAATTTTTGGAAGAGTGCATTGCTATTAGTCACAACCCTCAACAACATTGCTTTTATTGCCAAGATTGTCCACTTGAAAGGTCCAAGAATGATGGTTGTTTGGAACCGTGTAAAGGACACCTGAAGAGAAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGCCAACCGCGTTATCCAGCGAGGAGTAGCATACAACTTGCAGGTATTTTTCACTTCCGAAGGAAAAGGATGGGGACTTCGTACCCTAGAGGACCTGCCAAAAGGAGCATTTGTGTGTGAATTTGTTGGAGAAATTTTAACTATTAAAGAGTTGCATGAGAGGAATATGAAATGCGCTGAAAATGGTAAATCTACACACCCAATTCTACTGGATGCGGATTGGGTTTCAGGATTTGTGAAGGACGAAGAAGCTCTATGCATAGATGCAGCGTCCTTTGGCAACATTGCTAGATTTATCAATCACAGATGTTCTGATGCAAATTTGGTTGAAATCCCAATTCAAATGGAGTGTCCAGATCGTTACTACCATCATTTTGCCCTTTTCACTACCAGAAAAATAGCTGCACAGGAAGAGCTCACTTGGGACTATGGCATTGACTTTGATGACCATGATCAACCTGTTAAACTGTTTCAGTGCAAATGTGGCAGCAAGTTCTGCAGGAATATGAAGCGATCAAACAGATCAACTAGATCTGCGTTAATTGCTGGATGA 2484 0.4138 MFRSSCSITHKSSYGVFVSIFYIWLFVAKVTVGWLKMAPRPNPKIAAALTAMGALGIDEAKVKSVLKKLLKLYDKNWELIEEENYRALLDAIFEEGDNFEEPEQQNKNKRVINEEETEAEKAPINGESARPLKRLRLRGENNSPSSASSPSKKPHIENANALQGCSAQQSQNKAVSSEENVRIAGRPSPIRNTSSDRGKQPALPQVSLGGRRHVSERASPSKHPTVEPGKFLLPSYQTPHAYTMTEPKPEPVDEADYEVPIAMVAPEPSSLRHSSMKNGITRKQQGGNVSMTSSNHNTNKEGASDVVIASSAQGEVKLSLSCSSALQGPNFRMPTQEQLLKMMEDKCLRSYKITDPTFSATKMLRDICDCVLEFTTDSNDDSQEGSRTRSSIDVSKELDVNGTAGIGGSKDLDTGSHSSNGSLQVNSFSALVSPRGPFLPAHQSSLDDAVLVSMMDKTDDIPQSDVRLQPEDPMSTNSLSLVVVPNHQLTADDIRSFHDVNDLTKGEENNQISWVNETTDDFPPPFSYIPQNLVFQDACVKISLSRIGAKDCCSCIGSCILSTNCACIDKTGGGFAYTARGLMKEEFLEECIAISHNPQQHCFYCQDCPLERSKNDGCLEPCKGHLKRKFIKECWSKCGCGKQCANRVIQRGVAYNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTIKELHERNMKCAENGKSTHPILLDADWVSGFVKDEEALCIDAASFGNIARFINHRCSDANLVEIPIQMECPDRYYHHFALFTTRKIAAQEELTWDYGIDFDDHDQPVKLFQCKCGSKFCRNMKRSNRSTRSALIAG* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4016 827 Pfam Ubiquitin-binding WIYLD domain 44 97 IPR018848 GO:0018024
Tpr1g4016 827 ProSiteProfiles SET domain profile. 655 788 IPR001214 GO:0005515
Tpr1g4016 827 Pfam Pre-SET motif 504 647 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g4016 827 MobiDBLite consensus disorder prediction 187 201 - -
Tpr1g4016 827 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 37 822 - -
Tpr1g4016 827 MobiDBLite consensus disorder prediction 378 419 - -
Tpr1g4016 827 Gene3D SET domain 490 814 IPR046341 -
Tpr1g4016 827 ProSiteProfiles Pre-SET domain profile. 551 652 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g4016 827 Pfam SET domain 667 788 IPR001214 GO:0005515
Tpr1g4016 827 MobiDBLite consensus disorder prediction 99 224 - -
Tpr1g4016 827 MobiDBLite consensus disorder prediction 139 178 - -
Tpr1g4016 827 Gene3D - 35 98 IPR043017 -
Tpr1g4016 827 SUPERFAMILY SET domain 511 811 IPR046341 -
Tpr1g4016 827 SMART set_7 655 794 IPR001214 GO:0005515
Tpr1g4016 827 MobiDBLite consensus disorder prediction 100 123 - -
Tpr1g4016 827 CDD SET_SETDB-like 524 788 - -
Tpr1g4016 827 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 37 822 - -
Tpr1g4016 827 MobiDBLite consensus disorder prediction 380 394 - -
Tpr1g4016 827 SMART preset_2 500 639 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g4016 827 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 16 827 IPR025776 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4016 Tpr-Chr1 45231543 45238842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4016 502 811 Su(var)3-9 homologs AT1G73100 31.003 2.36e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr1g4016 Pre-SET 2.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4016 - - gmx:100787369 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4016 1 45231543 45238842 Tpr6g3347 6 36132872 36139991 PCT