Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4015 ATGGATTTTGCCTCAACAACTTTAGTATTTCATTCTATTAAAGAGGTTGAAGATTTCTATGGTCAGTATGCATATAAAACTAGATTTTCAATCAAGAGTATGTTGAAGTCGAAGAATAATTCAAAGAATAAGAAGTCGGATAAGATACATTACATACGTTATGTTTGTAACAAAGAAGGTTTTAAGAAAGGAAGTTTGCTTAATCCGAACAACAAGCCAAGATCAGACAGTCCGGTTGTTATTGAATTTGAAAAAGTGAAAGAGAGACCGGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATCTCAAGTTGGATGAAGCATTGAATGTTTATAAGATATATAGATGGGAAGGGACACACTGTCATTCACTACATAGAAAAGAGCATCACCGTTACCTCAGATCATTCCGAGAAGTAAATGAAGTTCAAGGACAACTTGCTTTAATTAATTCTAAAGCTGGAATGTCGATGAGGACGTCTTATGAAGTCATGGGTCAAGGAGTTGGAGGCACGGAGAATCTCCCATTTCGATTTTCGGACTTAAAGAATTATTTGATGACAATTCGTTCAAAGGAGATGATGAGGGGTGAAGCAACTGTAATTCAAGAGTTTTTTAGGAATGAAGCTATGTCGAAACCATCTTTTTATTATGATATGCAAGTTGATGCTGCAGAAGACATAGCTAGCATTTTTTGGGAAGATGGAATTATGCAACTGGATTATTCTTTATTTGGCGATGTCATCAGTTTCGTTACAATGTACCGAACAAACAATCAATATTGTCCATTAGCCGCCTTTCTTGGTTTTGACAATCATCGCAAGAGTGTCTTATTTGGTGCTGCCTTACTGTATGATGAGACAGCTGCTACTTTTCATTGGTTATTTACCGCATTCTTAAAGTGCATGTCTAATAAGAAACCACAGACGATATATACAGACCAGGCTACTGCGTTGTTGAAGTCAGTTCCGAATATTTTTCAAGGTGTTTTCCATGGTCTTTGTTCGTGGCACATGTCAGAGAATGCAAAGAAAAATCTCGGTACTCGTGCGAACAGTTCCTTTTTTGATGAGTTAACTAATTTGATTTCAAATGTAGAAGACGAATCAGATTTTGACTACAATTGGGATCGGATGATGAAAATTTTTTTTGATGGAAGGCCTATTTCAGACTGGACATGA 1179 0.3656 MDFASTTLVFHSIKEVEDFYGQYAYKTRFSIKSMLKSKNNSKNKKSDKIHYIRYVCNKEGFKKGSLLNPNNKPRSDSPVVIEFEKVKERPEERVGCKAGIYLKLDEALNVYKIYRWEGTHCHSLHRKEHHRYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFSDLKNYLMTIRSKEMMRGEATVIQEFFRNEAMSKPSFYYDMQVDAAEDIASIFWEDGIMQLDYSLFGDVISFVTMYRTNNQYCPLAAFLGFDNHRKSVLFGAALLYDETAATFHWLFTAFLKCMSNKKPQTIYTDQATALLKSVPNIFQGVFHGLCSWHMSENAKKNLGTRANSSFFDELTNLISNVEDESDFDYNWDRMMKIFFDGRPISDWT* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4015 392 Pfam MULE transposase domain 249 341 IPR018289 -
Tpr1g4015 392 PANTHER OS01G0607050 PROTEIN 8 380 - -
Tpr1g4015 392 Pfam FAR1 DNA-binding domain 18 125 IPR004330 -
Tpr1g4015 392 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 380 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4015 Tpr-Chr1 45191336 45211126 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g4015 FAR1 1.8e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4015 - - mtr:MTR_0558s0020 434.876