Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4009 ATGTCAAGTGTCTCTAAAGATGAAAACTTGGCACTTTCTTCTGAGGATTCTTCTAGCCCAGATGAGTCTGAGCTTGAATTGGGTCTTGGGTTAAGCCTTTCTCACCCAACAAAATCACACCAGTACCATCATCATAATCACCATGGTTCTTATGCTAGAATTTTCACTGCTAAGGATTTTTCTTCTTCACCTTCTTCTGTTGGTACCAAAAGACCTGCTGATTCTCTTGATGCTACCAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGAACATATCGAGTGAATAGCTTTAATGCCAACACTAAATCAACCGAAGCATTCAACTCTGTGGCCGAGAAGAGCAAGAACAATAATACTTCTGTAAGGAAGAGTGCTGACAATGGAAATGATGATAACAATGTTAATATCAAAGAAAAAAGACACCTCAGGAATTCCCCATTTGTCAAAGTAAAAATGGATGGAATACCGATTGGAAGAAAGATTGATTTGAGTGCTCACAGTTCATATGAAACATTGGCACAAACATTGGAGGACATGTTTGATGAATCAACTACAAATGTCACTTGCAAAGGATCAAATGGGGAGGACCACAACATGACTATCAGAAGAGAAAGGCATTCAATACTGTTGGATGGATCTTCCAAGTTTGTACTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTTAGTTCGGTAAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGCACCGAGATTGGAAGAAAAGAATAGCAGACAGAAAAGCAAGCCCATATAA 825 0.4061 MSSVSKDENLALSSEDSSSPDESELELGLGLSLSHPTKSHQYHHHNHHGSYARIFTAKDFSSSPSSVGTKRPADSLDATNRPSQVVGWPPLRTYRVNSFNANTKSTEAFNSVAEKSKNNNTSVRKSADNGNDDNNVNIKEKRHLRNSPFVKVKMDGIPIGRKIDLSAHSSYETLAQTLEDMFDESTTNVTCKGSNGEDHNMTIRRERHSILLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEEKNSRQKSKPI* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4009 274 Gene3D - 142 264 - -
Tpr1g4009 274 SUPERFAMILY CAD & PB1 domains 143 250 - -
Tpr1g4009 274 MobiDBLite consensus disorder prediction 61 86 - -
Tpr1g4009 274 MobiDBLite consensus disorder prediction 110 136 - -
Tpr1g4009 274 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 264 IPR003311 GO:0005634|GO:0006355
Tpr1g4009 274 MobiDBLite consensus disorder prediction 61 82 - -
Tpr1g4009 274 MobiDBLite consensus disorder prediction 1 27 - -
Tpr1g4009 274 Pfam AUX/IAA family 30 261 IPR033389 -
Tpr1g4009 274 MobiDBLite consensus disorder prediction 110 133 - -
Tpr1g4009 274 ProSiteProfiles PB1 domain profile. 147 254 IPR000270 GO:0005515
Tpr1g4009 274 MobiDBLite consensus disorder prediction 1 18 - -
Tpr1g4009 274 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 9 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4009 Tpr-Chr1 45121736 45125579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4009 140 261 B3 DNA Binding Superfamily AT1G59750 33.607 2.53e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr1g4009 AUX_IAA 8.2e-62 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4009 K14484 - gmx:100779400 369.392