Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4005 ATGGCTGGACTTGCTGTGACATATGGCCTGAATTTAAATGGACGATTGTCTCGCTGGATACTTAGCTTTTGTAAGCTAGAAAATAAAATTATATCTATTGAAAGAATTTATCAGTACAGTCAAATTCCTAGTGAAGCACCACCAGTTATTGAAGAATCTTGCCCTCCGTCCTCATGGCCCGAGAATGGGACAATCCAACTAATTGATCTGAAGGTTCGTTACAAGGAAAATCTTCCCATGGTTCTTCATGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTCGGACGAACTGGCAGTGGCAAATCTACTTTGATTCAGGCATTATTTCGATTGGTTGAACCAGAAACCGGGAGAATCCTTATAGACAACATTGATATCTCAGGAATCAGTCTTCATGACCTTGGCATCCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAGGCAATCTTGATCCTCTTGAAGAGCATTCTGATAAAGAGATTTGGGAGGCACTAGATAAGTCTCAGCTTGGACAGATCATCCGTGACCAAGAACAAAAGCTTGATACACCAGTGCTAGAAAATGGTGATAATTGGAGTGTACGACAGCGGCAACTTGTTTCTCTTGGTCGAGCCCTACTCAAGCAGTCAAAGATACTTGTACTTGATGAAGCAACAGCATCTGTTGATTCTGCAACTGATAAGCTTAACCAGAAGGTTATCCAAGAAGAGTTCAGAGACTGCACTGTGTGCACTATTGCTCATCGTATTCCTACTGTTATTGACAGTGATCTTGTTCTGGTACTCAGTGATGGTCTAGTTGCAGAGTTTGACACCCCATTGAGACTATTAGAAGATAAGTCATTGATGTTTTTGAAGTTGGTGACTGAATATTCATCGAGATCAAGTGGCATGCCGGATTTTTAA 936 0.4135 MAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIPSEAPPVIEESCPPSSWPENGTIQLIDLKVRYKENLPMVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPETGRILIDNIDISGISLHDLGIHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGQIIRDQEQKLDTPVLENGDNWSVRQRQLVSLGRALLKQSKILVLDEATASVDSATDKLNQKVIQEEFRDCTVCTIAHRIPTVIDSDLVLVLSDGLVAEFDTPLRLLEDKSLMFLKLVTEYSSRSSGMPDF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4005 311 Pfam ABC transporter 82 230 IPR003439 GO:0005524
Tpr1g4005 311 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1 311 - -
Tpr1g4005 311 SMART AAA_5 91 276 IPR003593 -
Tpr1g4005 311 CDD ABCC_MRP_domain2 63 283 - -
Tpr1g4005 311 Gene3D - 49 300 IPR027417 -
Tpr1g4005 311 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 299 IPR003439 GO:0005524
Tpr1g4005 311 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 311 - -
Tpr1g4005 311 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 291 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4005 Tpr-Chr1 44981001 44983522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4005 91 289 Calmodulin-binding Proteins AT2G36910 32.500 4.15e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4005 - - cam:101514243 555.444