Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4004 ATGGAAGAAGAACAGGATCGAATTTTGCTTACTACTTTAGGCGTTAAATCCGCCAATCCTGAAGACATCGAACGCCACGTTCTCCAAAAGGCTACTAGGAATGATTCAGTTACTGTTACTGAAGCTGAAGGGAACACTGATGAAAAAGAAGGTTCTACTTTACCTGAAAATGTTGATCCGTTATCTACTGCAAAAGCTGAACTTCATCAGAAGTTGAGAGCGATCGAATTTGAAATTGGTGCGGTTTCTTCCACCATTAAACGGCCTAGAGATGTTGATAAGGGTGAAGAAAATGGCGATGTTGGTGAGGAGAATGATAATGTGGAGGAAGGGATTGGTGAGGGTGGTGGTTCGGAGCTTCAGCTTGCTCTTGCTGCTGATAGGTTGAGAAGTTTGAAGAATACAAAGGCTCAATTGGAGAAAGAGCTTTCGAGATTTTCTAAGGATGGTGATTCGAAAAGTACTGAGCGTAAAAAAGTTGTCTTTAGTTTAGTTAAGGAGGATCGAAGACCAAAGAAGAAGCTTAAAGATGATAAGAAATTAAGTAAAAGACCTGCGAAGCGGTTTAAGACGGTTTCATTTGATGACGATGCTGATTTTGATGCTGTTCTGGATGCTGCCTCTGCGGGATTTGTAGAAACTGAAAGGGATGAATTGGTTAGAAAAGGAATTTTCACTCCTTTTCATAAGTTAAAGGGCTTTGAGCGTGGCATTCAACAACCTCAAGCATCAACTAGTCGTAATGCAGCTGAGCAAGAAAATGCTGACGATCGTGTTTTGCCCAGTGTTGAGAGAGCTGCCAGATCATTTTCTCAGGCAGCAAGAGCTCGCCCAACCTCCAAGCTGCTTCAGCCTGAAGAGTTACCGAAGCTTGATGCACCCACTATTCCTTTTCGCAGGCTAAAAAAACCACTACAATTACCCCAACCTATAGACAGTGACGAGGATCTTAATACAGATTCAAAAAGGAAAAAGAAGCGACCTTTGCCTGGTAGGAAATGGACCAAGCGTATTTCTTCTGAGGATAGAAAACTGGAAGGAAAAAATGCAAATGGTTGCTTGGACACTTCCAGTTGTGAAAGTTTAGAAGTGCATGATGTTGAACTTTCTGAACATGAATCTTATGTAACATTAGAAGGTGGATTGAAAATCCCTGATAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAGTTGCACTGCCAAGATACTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTATACAAGTGTTATCATTTCTGGCTGCATTGCATTTTAGTGGCATGTATAAACCCAGCATTATTGTCTGTCCTGTTACACTCCTGCGGCAGTGGAAAAGGGAAGCTAAAAAGTGGTATCCTAAATTTCATGTAGAACTTTTACATGATTCTGCTCGGGATCTGGGTTCTAAAAAGAAGCGAGCTGAATCCGATGGAACAGACTCTGAAAGAAATAGTTCAAGCGACAATGATTATGAGAGAAGCGTACCGTCTAAAAACACAAGAAAATGGGAAACCCTGATAAATCGTGTCATGAGATCAGAATCTGGATTACTCATCACCACTTATGAGCAGCTAAGGATATTGGGGGACCAGTTGCTTCACATTGATTGGGGCTATGCTGTTCTTGATGAAGGGCATAAAATAAGAAATCCAAATGCAGAAGTTACATTAGCTTGCAAACAGCTACAAACTATACACCGCATCATAATGACTGGTGCACCTATTCAGAACAAACTGAGTGAGTTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGCGGATATTCAAATGCTTCTCCATTACAAGTATCCACAGCATACAGGTGTGCTGTCATGCTACGAGATTTAGTTATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTAAATGCCCAACTTCCAAAGAAAACCGAGCATGTTCTGTTTTGCAGCCTTACATCAGAGCAAATATCTGCTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGGAAATATTGGATGGAGGCAGAAATTCGCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCATCCAGACCTACTTGAAAGGGAACATGCCTTCAGCAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAGCAGGGCCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACCACTTCTGGTCATATTTACCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATGGATGAATTTAATGCCTCGATTGAGATTTTTGTTTTCATTTTAACAACCAAAGTAGGGGGGTTGGGGACAAATCTTACTGGTGCAGATAGAGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGACATGCAGGCTAGAGAGCGTGCATGGCGAATTGGTCAGAAACGGGATGTCACAATATATAGGTTAATCACTCGTGGAACTATAGAGGAGAAAGTGTATCATCGTCAGATTTACAAACATTTTCTTACCAATAAGATCTTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGAGATATGAAGGACCTTTTTGTATTGAATGTGGATGGAGAAACTGGCTCAACAGAAACATCAAATATTTTCAGTCAAATATCTGAAGATGTAAATATTACTGGGACACATCAAGATAACCAGGATAAGATTGAATATAGTCAAACTGCTGAACTGGGTTCTGAAGATGCTGCAGTTGATAATGATGACAAATCACACACAAGATCTTCAAGAGGAAAATGGAAAGAAAAGGTTGACAAAAGTAATGAGGTTGATGGAGAAGCGGATATATTGAAAAGTCTTTTTGATGCTAATGGGATACATAGTGCCATGAACCATGAGTTGATCATGAATGCCAATGATGAGGAGAAGATGAGACTTGATGAGCAAGCTTCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGATCCGAAGCCATGAAAGCGTCTCTGTTCCTACATGGACTGGAAGGTCGGGAACTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAAACCCCTGTTGCTAAACAATAGCAAAGCATCTGATGAATTACCAAGCAGCGGATCCAACAAATTCAATGGATATGCTGCTGGGGCATCTTCTGGTAAGGCATTATCTTCTGCTGAAATATTATCTAAAATTCGAGGTAATCAAGAAAAAGCCATCAGTGCCGGGCTTGAGAATCAGTTTGGTATGTCGTCAAGTTCCACAAATCAGTCAAGATCTATAAATGTTAGAACTACAAGGGCTCCTGAAAATTCATCTGGATTCCAACCTGAAGTAATGATACGGAAAATCTGTACCTTTTTCGAACAGAAAGGTGGCAGGTGTAGTTCAGACAGCATAGTTCAGCATTTCAAGGACAGGATCCCCTCAAAAGATCTTGCCCTGTTCAAGAATATGTTAAAGGAAATAGCAACGTTGCAGAAAGGATCAGATGGTTCCCATTGGGTTCTGAAGCCAGACTATCGAGAATAG 3672 0.4107 MEEEQDRILLTTLGVKSANPEDIERHVLQKATRNDSVTVTEAEGNTDEKEGSTLPENVDPLSTAKAELHQKLRAIEFEIGAVSSTIKRPRDVDKGEENGDVGEENDNVEEGIGEGGGSELQLALAADRLRSLKNTKAQLEKELSRFSKDGDSKSTERKKVVFSLVKEDRRPKKKLKDDKKLSKRPAKRFKTVSFDDDADFDAVLDAASAGFVETERDELVRKGIFTPFHKLKGFERGIQQPQASTSRNAAEQENADDRVLPSVERAARSFSQAARARPTSKLLQPEELPKLDAPTIPFRRLKKPLQLPQPIDSDEDLNTDSKRKKKRPLPGRKWTKRISSEDRKLEGKNANGCLDTSSCESLEVHDVELSEHESYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQDTGGIIGDEMGLGKTIQVLSFLAALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSARDLGSKKKRAESDGTDSERNSSSDNDYERSVPSKNTRKWETLINRVMRSESGLLITTYEQLRILGDQLLHIDWGYAVLDEGHKIRNPNAEVTLACKQLQTIHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYSNASPLQVSTAYRCAVMLRDLVMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQISAYRAFLASTEVEEILDGGRNSLYGIDVMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTSGHIYRRMDGLTPVKQRMALMDEFNASIEIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEDVNITGTHQDNQDKIEYSQTAELGSEDAAVDNDDKSHTRSSRGKWKEKVDKSNEVDGEADILKSLFDANGIHSAMNHELIMNANDEEKMRLDEQASQVAQRAAEALRQSRMIRSHESVSVPTWTGRSGTAGAPSSVRRKFGSTVKPLLLNNSKASDELPSSGSNKFNGYAAGASSGKALSSAEILSKIRGNQEKAISAGLENQFGMSSSSTNQSRSINVRTTRAPENSSGFQPEVMIRKICTFFEQKGGRCSSDSIVQHFKDRIPSKDLALFKNMLKEIATLQKGSDGSHWVLKPDYRE* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4004 1223 PANTHER SNF2/RAD54 FAMILY MEMBER 251 1122 - -
Tpr1g4004 1223 CDD SF2_C_SNF 735 860 - -
Tpr1g4004 1223 Pfam SNF2-related domain 395 717 IPR000330 GO:0005524|GO:0140658
Tpr1g4004 1223 SMART helicmild6 766 849 IPR001650 -
Tpr1g4004 1223 MobiDBLite consensus disorder prediction 235 340 - -
Tpr1g4004 1223 MobiDBLite consensus disorder prediction 481 507 - -
Tpr1g4004 1223 MobiDBLite consensus disorder prediction 1129 1153 - -
Tpr1g4004 1223 Gene3D - 659 960 IPR027417 -
Tpr1g4004 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 908 IPR027417 -
Tpr1g4004 1223 Gene3D - 361 652 IPR038718 -
Tpr1g4004 1223 MobiDBLite consensus disorder prediction 1041 1055 - -
Tpr1g4004 1223 MobiDBLite consensus disorder prediction 1041 1060 - -
Tpr1g4004 1223 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 899 IPR001650 -
Tpr1g4004 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 653 IPR027417 -
Tpr1g4004 1223 CDD DEXHc_ERCC6 392 602 - -
Tpr1g4004 1223 MobiDBLite consensus disorder prediction 952 975 - -
Tpr1g4004 1223 MobiDBLite consensus disorder prediction 1129 1154 - -
Tpr1g4004 1223 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 251 1122 - -
Tpr1g4004 1223 Coils Coil 122 149 - -
Tpr1g4004 1223 Coils Coil 1012 1032 - -
Tpr1g4004 1223 MobiDBLite consensus disorder prediction 26 57 - -
Tpr1g4004 1223 MobiDBLite consensus disorder prediction 947 975 - -
Tpr1g4004 1223 Pfam Helicase conserved C-terminal domain 742 849 IPR001650 -
Tpr1g4004 1223 SMART ultradead3 388 611 IPR014001 -
Tpr1g4004 1223 MobiDBLite consensus disorder prediction 85 116 - -
Tpr1g4004 1223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 404 603 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4004 Tpr-Chr1 44966216 44973335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4004 692 902 RAD5 or RAD16-like Gene Family AT5G22750 31.308 6.49e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr1g4004 SNF2_N 2.3e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4004 K10841 - gmx:100820025 1878.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4004 1 44966216 44973335 Tpr1g4004 1 44966216 44973335 ECH