Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3993 ATGGGAAAGACAAGGGGAATGGGAGCTGCCCGCAAGCTGAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAGTCTCATCTTGGTAATGAATGGAAGAAGCCTTTTGCTGGCTCATCTCACGCAAAGGGAATTGTCCTTGAAAAGATTGGTATTGAGGCTAAGCAGCCCAACTCTGCTATTCGTAAGTGTGCCAGGGTTCAACTCATCAAGAATGGAAAGAAGATTGCTGCATTTGTTCCCAATGATGGTTGCTTAAACTACATCGAAGAAAATGATGAAGTTTTGATCGCTGGATTCGGAAGAAAGGGTCATGCTGTTGGTGATATTCCTGGAGTTAGATTCAAGGTTGTCAAGGTCTCTGGTGTATCTCTTCTTGCTCTCTTCAAGGAGAAGAAGGAGAAGCCTAGATCTTAA 429 0.4522 MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3993 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Tpr1g3993 142 MobiDBLite consensus disorder prediction 1 30 - -
Tpr1g3993 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Tpr1g3993 142 Gene3D - 25 142 IPR012340 -
Tpr1g3993 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Tpr1g3993 142 TIGRFAM uS12_E_A: ribosomal protein uS12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Tpr1g3993 142 Pfam Ribosomal protein S12/S23 31 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Tpr1g3993 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Tpr1g3993 142 MobiDBLite consensus disorder prediction 9 25 - -
Tpr1g3993 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Tpr1g3993 142 PANTHER BNACNNG03140D PROTEIN 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3993 Tpr-Chr1 44805415 44807098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3993 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.775 2.17e-96 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3993 K02973 - fve:101303309 286.96