Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3982 ATGAACTCCAATTCTCACTCAATGGCAACACCAACACCAACACCAACACCAGCACCAACTAGTGGTGGAGATGCTTCTAGCAAGAAAATTAGAAAGCCATACACCATTACCAAGTCCAGGGAAAGCTGGTCTGACGAAGAACACGACAAGTTTCTTGAAGCTCTTCAATTATTTGATAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCTAAAACTGTTATTCAGATTCGAAGCCATGCCCAAAAGTACTTCTTAAAGGTTCAAAAAAATGGAACACTAGCCCATGTTCCTCCTCCTCGTCCTAAGCGCAAAGCTATTCATCCTTATCCACAAAAAGCAACCAAAAATGTTTTGCTGCCACTTCCAGCATCCATTGCTTATGGATCATCCACAAATAGCCTTTTACCTGCAGGCTATGTCACATGGGATGAAACTTCCATGCTCATGGATAGTTGTCAGGATGAACTCAACAATCTTCATGGAAATGAAGCTGATATTGGATCGAAGGGGATTAGCAACAGTGATCTAATTGGTGTTGGAGACTCTACTACGAGGCTCACCGCTTCTCAAATACCAAATCAAGGGAAACAGAATCCTGTAACTCATGGATTGCCAGACTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTTTTTGATCCGGATACAAATGGCCATGTACAGAAGCTTAAGGAAATGGATCCTATAAACTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAATTTGTCTAGCCCGAATTTTGATCCCATTAAGAAGGCAATGTCAACATATGATGTGAATAACGATGCTGATGTGAAGAAGCAGGCAAATGATGTATCATGTCAAAACACTTGA 864 0.4039 MNSNSHSMATPTPTPTPAPTSGGDASSKKIRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNVLLPLPASIAYGSSTNSLLPAGYVTWDETSMLMDSCQDELNNLHGNEADIGSKGISNSDLIGVGDSTTRLTASQIPNQGKQNPVTHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPNFDPIKKAMSTYDVNNDADVKKQANDVSCQNT* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3982 287 ProSiteProfiles Myb-like domain profile. 35 85 IPR001005 -
Tpr1g3982 287 MobiDBLite consensus disorder prediction 1 42 - -
Tpr1g3982 287 PANTHER SWI/SNF COMPLEX-RELATED 13 276 - -
Tpr1g3982 287 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Tpr1g3982 287 SMART sant 39 87 IPR001005 -
Tpr1g3982 287 ProSiteProfiles SANT domain profile. 38 91 IPR017884 -
Tpr1g3982 287 CDD SANT 42 85 IPR001005 -
Tpr1g3982 287 PANTHER PROTEIN REVEILLE 8 13 276 - -
Tpr1g3982 287 Pfam Myb-like DNA-binding domain 40 85 IPR001005 -
Tpr1g3982 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 89 IPR017930 -
Tpr1g3982 287 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 38 87 IPR006447 GO:0003677
Tpr1g3982 287 Gene3D - 43 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3982 Tpr-Chr1 44640820 44644110 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr1g3982 Myb_DNA-binding 4.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3982 - - gmx:100797466 432.565