Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3976 ATGGATTCAACTTTTGATATGTTATGTGATGTTGTTCCTGGAAGGGAATCATGGAGGGTTAAGGTTAGGGTTATTCGTGTGTGGGAAGTTCCTAATTTCTTGAATCCTGACCAGATTAATTCGATTGAAATGGTTTTGATCGATGAGAAGGGTGGGAAAATTCATGCTACAATCAGGAAACAATTGTTGTATCTTTTTAAGAACAAGATTTCGGAGGGTCATGTTTATAAAATTTCTTATTTGGCTGTTGCACCAAGTTCTGGGAGCTATCGAACAACGTTGCATCCATACAAGTTCTTTTTTCAGATGAAGACCAAAATTCAAATCTGTCAAAGTGATGATATACCAAATTTTGGATTGTCAATTAGTAATATATCTGATGTTTGTTCTCATACCATTGATTATGATTTTTTAGTTGATGTCATGGGTATAATGACTGGTATTTCTGTAGAGAGGGAATACATTAAAGATGGAAGAGTTACAAAAATGATAGTTGTGGAGTTGACTGATAAGAGTGGTAAGTGTGAAATTGCATTGTTTGGAGACTATGTTGATATACTCCAGAAGAAAATGGAGAGTAATTCTGAAGGCTTACCAGTTGTAGCTGTTCAATTTGCCAAAGTTAAGATTTTTAGAGATAAAGTTTCGCTGCAAAATGTCATTAATACCACTCAGATTTTCATTAATCCTGATTTCAAAGAGGCTGTGGATTTAAGAAATGGGAATATTAATGTTGGGATTGAACACTCTGGTGTTGTTCCTGTTCTTGGTCCTCGTGGTAAAGCTACTTTGGAGGAAGATTTTTTGCTTGGTTATCAAAAAAGCACAATCTCAAAACTTTTAGGGTCATCTGAGGATGGTATTTTTATTGTTCTGGCTGTAGTTACTGATTTGGTTGATGGGCAAGACTGGTGGTATCCTGCGTGTCGTTGTCACAAAAGTGTGATTGCTGATTCTGGAGCTTATTATTGTAAGGGTTGCGTTAAGCATGTTTTTCATATGGTTCCTAGGTTTAAAGTTAAATTTAATGTTTGTGATGATACTGGTGATACTATCTTTGTTGTCTTTGACACTGATATGCCTGAAAATGCTGGGTTTTATCCAAGTGAATTGAAGAAATTAATTGGTGCTAAGTTGCTGTTTAAGGTTGAAAAATCTTCCTCAACCAATGTTTTATTCGATGGTTCGTTTAAGGTTAAGCGTGTTTGCAATGATTCATCTATTTTGCAAATTTTCAATTCTCCTGTCTCTGGAATTTCTGCTGCTGAGATTGGTAAGGGTTCTGTCGAATCTAGTGGGTTGGTTGATGATGATGATGATGATGATGATGATGATGATGATATTGAGATTGTTAAAGAAACTCAACTAGATGGATTTGTATCTGGTCTTTTGGTTTCTCCTGGATCAGAACTGGCACCTACTAATAAACAATTTGCTGCTGGTTCTGCGAAGAGAGATTTGTCCACTGCTTTTGAAGATGCTGATGTTTCCAATGGTGCTGTTCCAATTAAGTCAGTGAAAATTGAAAAGGAGTAG 1536 0.36 MDSTFDMLCDVVPGRESWRVKVRVIRVWEVPNFLNPDQINSIEMVLIDEKGGKIHATIRKQLLYLFKNKISEGHVYKISYLAVAPSSGSYRTTLHPYKFFFQMKTKIQICQSDDIPNFGLSISNISDVCSHTIDYDFLVDVMGIMTGISVEREYIKDGRVTKMIVVELTDKSGKCEIALFGDYVDILQKKMESNSEGLPVVAVQFAKVKIFRDKVSLQNVINTTQIFINPDFKEAVDLRNGNINVGIEHSGVVPVLGPRGKATLEEDFLLGYQKSTISKLLGSSEDGIFIVLAVVTDLVDGQDWWYPACRCHKSVIADSGAYYCKGCVKHVFHMVPRFKVKFNVCDDTGDTIFVVFDTDMPENAGFYPSELKKLIGAKLLFKVEKSSSTNVLFDGSFKVKRVCNDSSILQIFNSPVSGISAAEIGKGSVESSGLVDDDDDDDDDDDDIEIVKETQLDGFVSGLLVSPGSELAPTNKQFAAGSAKRDLSTAFEDADVSNGAVPIKSVKIEKE* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3976 511 CDD RPA1_DBD_B_like 140 239 - -
Tpr1g3976 511 PANTHER REPLICATION FACTOR A 1, RFA1 22 364 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g3976 511 SUPERFAMILY Nucleic acid-binding proteins 5 113 IPR012340 -
Tpr1g3976 511 CDD RPA1_DBD_A_like 19 107 - -
Tpr1g3976 511 Gene3D - 271 404 IPR012340 -
Tpr1g3976 511 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 364 - -
Tpr1g3976 511 Gene3D - 113 246 IPR012340 -
Tpr1g3976 511 SUPERFAMILY Nucleic acid-binding proteins 281 383 IPR012340 -
Tpr1g3976 511 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Tpr1g3976 511 CDD RPA1_DBD_C 274 402 IPR013955 -
Tpr1g3976 511 Gene3D - 5 110 IPR012340 -
Tpr1g3976 511 SUPERFAMILY Nucleic acid-binding proteins 121 240 IPR012340 -
Tpr1g3976 511 Pfam Replication factor-A C terminal domain 290 373 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3976 Tpr-Chr1 44516267 44518741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3976 13 371 Core DNA Replication Machinery Family AT4G19130 25.393 2.35e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3976 - - mtr:MTR_8g062030 491.115