Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3975 ATGGTTAATGTTTATAGCAAAATCAGTGATGTTCGTGTTGGGAAATTGCCATGTTTGTTGAAGGTTCGTGTGATGTGTTTGTGGATCGTGAAGTCAAATTTCATTCCTGGCCAGGAGAATTCAATTGAAATGGTGCTTATCGATGAGAAGGGTTCCAAGATTCATGCTACTGTTCGAAGGCATTTGATTCATATGTTTAAGGGTGTTCTTATTGAAGGTGAAGCTTATACTTTATCTACTTTTTCTGTTGTCGAAGCTTATGGGTTGTGCAGGCCGACCAGGCATCCTTGTCGTTTGTTTTTTCATTCTACCACGTTGTTGGAAAGAGTAGAATGTCCATTAATAAAGAAAAATGGACTGTCATTGATGGATATTGGGAAAATTAATTCTCATACATGTGACAGCAATTATTTAGTTGATTTAATTGGAGTTATGAGTGGTATTTCTTCTCTAAATGAGTTTACCAAAAATGGTGAACGTGTTAAGATGATTGTAATCGAGTTATCAGACCCCAGAGGTGACTGTCATGTTGTGTTGTTTGGTGGTATTGTTGACTACTTGATTCAAATGATGAGAACTCTACAAGGAGGATTACCTGTTGTTGTTGTCCAGTTTGCCAAAATTAGATTTTTTAGAGGTCGTGTTCTTCTTCAGAATATTCAAGATGTTACTAAGTTGTGGTTGAATCCTGCAGTTGAAGATGCTGTGTTGTATGGTCGAAGGTTGAATAAGATGCGCGGTGGTCCTACTACCCATGTGCCGTTAATAGGTCCTGGGCGTAAACCTTCTTTGGGTGATGAGTTTCTGCATCTGTATCCGAAGAAAACCATTGCTGATTTGAAATTTACACTTGAAGATGGACCTTTTATTGTGTCTGCTGTGATCGATGGTTTGGTCGAAGGAGAGGATTGGTGGTTTCCTTCTTGTCGTTGTTCAAAACGTTTGATACCAAATGCTGGGTTTTATTATTGTCGAAGTTGTTCAAAACATGTTTTCCATGTTGTGCCTAGGTTTTGTGTCAAAGTACATGTTACTGATGGTATTGAAGATGCAATGTTTGTTCTTTCTGATGATGCTATGTGTTACCTGATCCGCACTAAATGTAGTGTTTTGGTTTCATCCTACAAGGGAATGAATCGCGTTAATCCACCTGATGTCTTAAAGCAATTGGAAGGTTTAAAGTTGTTATTTAAAGTAGTTACTGTTTCGTCTTTGAATCCGATTTACAAAGGTTGCTTCAAAGTGGCTAGGGTTTGTGTTGATGCTGGTATTATTAAATCTTTTTCAAATGGTGGAATTTATCATACTCCTGAACAGTTGGTTTATAAGTCAGGCATTGCTGAAATTGATGAACCCTTTATTTTGGGTAACCAGCACATTGAACATGGGGATATTTTTATGAAGAGGTCTTTGAATGCTGCATTTGAAAATGCTGCTTGGCAGGAAGACCAAAGTTATCACAAACGATCCAGAGATTATTAA 1482 0.3772 MVNVYSKISDVRVGKLPCLLKVRVMCLWIVKSNFIPGQENSIEMVLIDEKGSKIHATVRRHLIHMFKGVLIEGEAYTLSTFSVVEAYGLCRPTRHPCRLFFHSTTLLERVECPLIKKNGLSLMDIGKINSHTCDSNYLVDLIGVMSGISSLNEFTKNGERVKMIVIELSDPRGDCHVVLFGGIVDYLIQMMRTLQGGLPVVVVQFAKIRFFRGRVLLQNIQDVTKLWLNPAVEDAVLYGRRLNKMRGGPTTHVPLIGPGRKPSLGDEFLHLYPKKTIADLKFTLEDGPFIVSAVIDGLVEGEDWWFPSCRCSKRLIPNAGFYYCRSCSKHVFHVVPRFCVKVHVTDGIEDAMFVLSDDAMCYLIRTKCSVLVSSYKGMNRVNPPDVLKQLEGLKLLFKVVTVSSLNPIYKGCFKVARVCVDAGIIKSFSNGGIYHTPEQLVYKSGIAEIDEPFILGNQHIEHGDIFMKRSLNAAFENAAWQEDQSYHKRSRDY* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3975 493 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 23 357 - -
Tpr1g3975 493 Gene3D - 271 416 IPR012340 -
Tpr1g3975 493 Gene3D - 115 246 IPR012340 -
Tpr1g3975 493 Gene3D - 5 111 IPR012340 -
Tpr1g3975 493 Pfam Domain of unknown function DUF223 43 110 IPR003871 -
Tpr1g3975 493 CDD RPA1_DBD_A_like 20 105 - -
Tpr1g3975 493 SUPERFAMILY Nucleic acid-binding proteins 272 407 IPR012340 -
Tpr1g3975 493 PANTHER REPLICATION FACTOR A 1, RFA1 23 357 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g3975 493 SUPERFAMILY Nucleic acid-binding proteins 6 109 IPR012340 -
Tpr1g3975 493 SUPERFAMILY Nucleic acid-binding proteins 120 238 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3975 Tpr-Chr1 44511717 44514145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3975 46 359 Core DNA Replication Machinery Family AT5G08020 21.988 3.50e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3975 - - mtr:MTR_8g062030 329.331