Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3966 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCCGATACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCAGCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGGACTCTTGCGGATTATAATATCCAGAAAGAGTCTACGCTACATTTGGTTCTTAGGTTGCGCGGTGGAATGCAGATTTTTGTGAAGACGTTGACGGGGAAGACGATTACTCTTGAGGTGGAGAGTTCTGATACTATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGGATTCCACCTGATCAACAGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGATGA 390 0.4538 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3966 129 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Tpr1g3966 129 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Tpr1g3966 129 PANTHER UBIQUITIN 1 129 - -
Tpr1g3966 129 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Tpr1g3966 129 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Tpr1g3966 129 Gene3D - 1 76 - -
Tpr1g3966 129 CDD Ubl_ubiquitin 1 76 - -
Tpr1g3966 129 Gene3D - 77 127 - -
Tpr1g3966 129 Pfam Ubiquitin family 79 128 IPR000626 GO:0005515
Tpr1g3966 129 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Tpr1g3966 129 PRINTS Ubiquitin signature 11 31 IPR019956 -
Tpr1g3966 129 PRINTS Ubiquitin signature 32 52 IPR019956 -
Tpr1g3966 129 PRINTS Ubiquitin signature 53 74 IPR019956 -
Tpr1g3966 129 SUPERFAMILY Ubiquitin-like 76 129 IPR029071 -
Tpr1g3966 129 SMART ubq_7 77 128 IPR000626 GO:0005515
Tpr1g3966 129 SMART ubq_7 1 72 IPR000626 GO:0005515
Tpr1g3966 129 PANTHER - 1 129 - -
Tpr1g3966 129 ProSiteProfiles Ubiquitin domain profile. 77 129 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3966 Tpr-Chr1 44339719 44340430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3966 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 4.87e-51 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3966 - K08770 zju:107434035 252.292