Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3965 ATGAGCGTCATCGACCTTCTAACTCGAGTTGATTCCATTTGCAAAAAGTACGACAAATACGACCTCGAAAAGCACAAGGATGCCAATGTCTCCGGCGACGATGCTTTCGTCAGACTCTACTCTTCTGTCAACTCTGACATCGAATCTCTACTTCAGAAAGCAGAAACAGCTTCCAAGGATAGAGGGAAGGCATCTGCTGTAGCGATCAATGCCGAGATTCGTCGTACTAAGGCTAGGTTGTTGGAGGAAGTTCCCAAGTTGCAGAGGTTGGCTGTCAAAAAGGTAAAAGGGCTTTCGTCGCAAGAATTTGCTGCACGAAATGATCTTGTTCTTGCATTGCCAGAAAGAATCCAAGCTATCCCAGATGGGACTCCTGCTGCACCAAAACAAACTGGTGGTTGGGCATCTTCTGCCTCACGTGCTGAAATTAAATTTGATTCAGATGGCCGATTTGATGATGAGTACTTTCAATCAACTGATCAATCAAACCAATTCAGGCAGGAATATGAAATGCGTAGAATAAAACAGGATCAAGGTTTGGATGTGATTGCAGAAGGATTGGATACTTTGAAAGACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCCCTGATGGATGAGATTGACACTAAGGTGGACAAGGCATCGTCTGATCTTAAGAATACTAATGTTAGACTTAAAGACACAGTGAATCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTCTGGGAATTGCTGCCTACTTATACAATGTGCTAAAGAAATGA 798 0.4223 MSVIDLLTRVDSICKKYDKYDLEKHKDANVSGDDAFVRLYSSVNSDIESLLQKAETASKDRGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPAAPKQTGGWASSASRAEIKFDSDGRFDDEYFQSTDQSNQFRQEYEMRRIKQDQGLDVIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3965 265 CDD SNARE_Qc 175 230 - -
Tpr1g3965 265 Pfam SNARE domain 207 256 IPR000727 -
Tpr1g3965 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tpr1g3965 265 Gene3D - 170 231 - -
Tpr1g3965 265 SUPERFAMILY SNARE fusion complex 165 230 - -
Tpr1g3965 265 SMART tSNARE_6 165 232 IPR000727 -
Tpr1g3965 265 PANTHER SYNTAXIN 1 261 IPR045242 -
Tpr1g3965 265 PANTHER SYNTAXIN-73 1 261 - -
Tpr1g3965 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3965 Tpr-Chr1 44316085 44325111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3965 1 264 SNARE and Associated Proteins AT3G09740 75.564 1.07e-153 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3965 K08506 - gmx:100819272 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3965 1 44316085 44325111 Tpr1g3965 1 44316085 44325111 ECH