Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3963 ATGCAAATGATTCCCAATGACCCTTTTTCACTTGGAGTGTTTAGTACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATACTCCTCCTGTCCCCAAGAAGAAGAGAAATCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTGTCACCAAAGACCCTCATGGCAACAAACAGATTCATCTGTGAAATATGCAACAAAGGTTTCCAAAGAGATCAAAACCTTCAACTTCACAGAAGAGGACACAACCTTCCATGGAAGCTTAGGCAGAGATCAAACAAAGATGTTATTAAGAAGAAAGTTTACATCTGTCCAGAGAAGACTTGTGTCCACCATGACCCTTCAAGAGCACTTGGTGACCTCACAGGTATAAAAAAGCACTTTAGTAGAAAGCATGGTGAAAAGAAGTGGAAATGTGAAAAATGTTCTAAGAAATATGCAGTCCAATCTGATTGGAAAGCTCACACAAAAACTTGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAGGAAAGATAGTTTCATTACACACAGAGCTTTTTGTGATGCATTGGCAGAAGAGAGTGCAAGGATAAGTTCAGTTCCAATTCCAACAACAAATCTAAATTTCAAGAATGAAGAATGTAGTGGTTCTATGATGGGTTCACATTCACATTCACAACATGGAATATTTCAAAACATAGGTGGAATTCCATATCCACAATATGGTTCAAATCATGGATTTCATGTAGATTTCAACAACAATTTGTTGATGATGGATCAACAAAGACCAAGTTTATCACTCTGGTTGAACCAGGGGAATCATGAAATGGGACAAAGTTCTAACAATAATTCCCTTTTTGGTTCTTCATGTTTATCTGAGATTGTTCAAATGGGAAATACCAATAACAACAATAATGCCTTGATTTCTTCTTCTTCATCATCATCATCATCATCATCAATGTTGTCTAATTTTGGTGCAAATTCAACATCTGCTGCAAATCTTTCTCAATCAAAGACTGCACCATCTGGTTCTGTTTCTGTTTCTGTTTCTGCTACACCAATGTCAGCAACTGCTCTTCTGCAAAAAGCAGCTCAAATGGGTTCAACTAAAAGCAATAATGGTGCTGCTGCTACTACTAATAATAATAATAACAACCCTTCTATTTTTAGTGCTAGTTTTGGAGTAATGACATCACCGTCTTCATCAAATAATAGTTTTGATCATTTTTTGATGCATGGACAACAAAGTGAACAAGGAAAATTGAATATTTTGCATCATGGTGTTAGTACTTCTTCAAACTCTATGGAACAAGGTCAAAATAGTAACTTGACAAGAGATTTTCTTGGTGTGAGTGGAAGAAGTGGTCCTCCTCCACAGTTTCTACCTCAAGAGCTAGCAAAATTTGCTTCTATGCAATACACAGGAAATTAA 1434 0.3731 MQMIPNDPFSLGVFSTQEQNTNPNPKPNTPPVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARISSVPIPTTNLNFKNEECSGSMMGSHSHSQHGIFQNIGGIPYPQYGSNHGFHVDFNNNLLMMDQQRPSLSLWLNQGNHEMGQSSNNNSLFGSSCLSEIVQMGNTNNNNNALISSSSSSSSSSSMLSNFGANSTSAANLSQSKTAPSGSVSVSVSATPMSATALLQKAAQMGSTKSNNGAAATTNNNNNNPSIFSASFGVMTSPSSSNNSFDHFLMHGQQSEQGKLNILHHGVSTSSNSMEQGQNSNLTRDFLGVSGRSGPPPQFLPQELAKFASMQYTGN* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3963 477 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Tpr1g3963 477 MobiDBLite consensus disorder prediction 9 23 - -
Tpr1g3963 477 MobiDBLite consensus disorder prediction 1 43 - -
Tpr1g3963 477 MobiDBLite consensus disorder prediction 24 38 - -
Tpr1g3963 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 334 - -
Tpr1g3963 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 332 473 - -
Tpr1g3963 477 Gene3D Classic Zinc Finger 41 116 - -
Tpr1g3963 477 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Tpr1g3963 477 PANTHER ZINC FINGER PROTEIN JACKDAW 8 334 IPR033243 GO:0003700
Tpr1g3963 477 PANTHER ZINC FINGER PROTEIN JACKDAW 332 473 IPR033243 GO:0003700
Tpr1g3963 477 SMART c2h2final6 140 160 IPR013087 -
Tpr1g3963 477 SMART c2h2final6 63 85 IPR013087 -
Tpr1g3963 477 SMART c2h2final6 105 135 IPR013087 -
Tpr1g3963 477 MobiDBLite consensus disorder prediction 363 383 - -
Tpr1g3963 477 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Tpr1g3963 477 Gene3D Classic Zinc Finger 118 199 - -
Tpr1g3963 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3963 Tpr-Chr1 44286111 44289146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3963 1 472 IDZ Gene Family AT5G03150 49.143 4.69e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g3963 zf-C2H2_jaz 6.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3963 K25870 - gmx:100801182 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3963 1 44286111 44289146 Tpr1g3963 1 44286111 44289146 ECH