Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3962 ATGGCAACTCAAGCTTCCAAGGATAATAATCACCAAGGAACTAGCACCATTGAAAATAAAGCTGATATTTCAATTCAAAAGGGTATGACATCATTTGAAATAACAGAGGAAGTCCCAAGTGAACAACAAAGAACAAGGCAAAACCTTACCTTAGAGACACCAAAAAAAACTCATGAAGAAGCAAAAGAAGATTTTTTGAGAATAAACATACCACTAACTCCATCACCAAGAAAAGTGATATTTTCTCCTTGCACAAGTCCTGGTTATTTCATTCCAACCAATGAATCTCCTGGTCCCTCTCCTTCTAGTTCTAAAACTAGATCAACTCTTAAAAAAACACTTATTCCTAAACTCAGTTTTAAATTTAAGAACACAACTTCTGAGATTGAAAAAGCCGCTTTCCTTGCACTTGGAGGTTCGTCTGCAGTGCCACAAAAGAAGCCTTTTCTTTCGAGGACATTGTCGCGTATGAAATCTAGAGGGAGGAAAACATCTTCGTTACCGGTATCACCTGTTCCTCGTTCAACTCCAGTGTCTGTACATGGAGGGAAAGCTTTTCCAACAATGGCTAGTGAGAAAGAACTGCAATTACCAATTCATCGTTCGCGATCTGTTCCTGCATTTACAGAAGATACTCCTGTAGGTGGCATGTTTCGTATAGTTCGGAACATACCGCAATTGAATGAGAAAATTGCCACCACATCATCTGCAGCATCTCCAACTAGTGAAAATGTGGAAACTGAGGATGAAGGTGAAGATATTCCAGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGGTGATACTTTTAAATTGGAGTGTAGTTGTAAAGGTGAGCTTTCACTAGCACACAAAGAATGTGCAGTTAAATGGTTTAGTATTAAAGGTAATAGAACATGTGATGTGTGCAAACAAGAAGTTCAGAACTTACCTGTCACTCTTTTAAGACTTCATCAAGCTAACTTGCAATCTAGCAGAGGTCACTTAGATGAATCTTCTCAATACAGGGTTTGGCAGGATGCCCCCATTCTTGTCATTGTCAACATGCTGGCATACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAAGTATGGGATCTGGTGCTATTGCCATGTCCCTCCCCTTTTCTTGTATACTTGGTCTTCTTGCAAGCATGACAGCTACAACCATGGGTGAGGCTTTGTTTCTACTTTCACTCATCTCACTGTACTTGAAGTTGAATTCCTCACAATTTACATTAATTCCTCCAAAAAATTTCTTAGTGAGGAGAAATCATGTTTGGATTTATGGAACCATGCAGTTTGTTTTGGTGGTTCTTGCTGGACATCTTCTCTATTCATTGGCTCATATGGAAGCTGTTTTGGCAATCCTACTAGCTACATTTGCTGGATTTGGATCTGTAATGTGTGGAACATGTATACTTATGGATATCATGAAATGGAGGAGAAGATGGCTTGCTCAGTTGAATCAACAGAATGGAGGTTCCGAAGCAGTGGCTCCGCCTGATCAATCATCTGCAGCGACCCATCAAACTCAAATTGATCCTCAACAGAATGAGTTGACAGCATAA 1584 0.3958 MATQASKDNNHQGTSTIENKADISIQKGMTSFEITEEVPSEQQRTRQNLTLETPKKTHEEAKEDFLRINIPLTPSPRKVIFSPCTSPGYFIPTNESPGPSPSSSKTRSTLKKTLIPKLSFKFKNTTSEIEKAAFLALGGSSAVPQKKPFLSRTLSRMKSRGRKTSSLPVSPVPRSTPVSVHGGKAFPTMASEKELQLPIHRSRSVPAFTEDTPVGGMFRIVRNIPQLNEKIATTSSAASPTSENVETEDEGEDIPEEEAVCRICMVELGEGGDTFKLECSCKGELSLAHKECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRLHQANLQSSRGHLDESSQYRVWQDAPILVIVNMLAYFCFLEQLLVSSMGSGAIAMSLPFSCILGLLASMTATTMGEALFLLSLISLYLKLNSSQFTLIPPKNFLVRRNHVWIYGTMQFVLVVLAGHLLYSLAHMEAVLAILLATFAGFGSVMCGTCILMDIMKWRRRWLAQLNQQNGGSEAVAPPDQSSAATHQTQIDPQQNELTA* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3962 527 MobiDBLite consensus disorder prediction 155 180 - -
Tpr1g3962 527 ProSiteProfiles Zinc finger RING-CH-type profile. 253 315 IPR011016 GO:0008270
Tpr1g3962 527 MobiDBLite consensus disorder prediction 232 252 - -
Tpr1g3962 527 CDD RING_CH-C4HC3_MARCH 261 309 - -
Tpr1g3962 527 MobiDBLite consensus disorder prediction 1 60 - -
Tpr1g3962 527 MobiDBLite consensus disorder prediction 1 50 - -
Tpr1g3962 527 PANTHER OS02G0165000 PROTEIN 425 523 - -
Tpr1g3962 527 PANTHER OS02G0165000 PROTEIN 8 396 - -
Tpr1g3962 527 SUPERFAMILY RING/U-box 257 312 - -
Tpr1g3962 527 MobiDBLite consensus disorder prediction 499 527 - -
Tpr1g3962 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 316 IPR013083 -
Tpr1g3962 527 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 425 523 - -
Tpr1g3962 527 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 8 396 - -
Tpr1g3962 527 Pfam RING-variant domain 261 308 IPR011016 GO:0008270
Tpr1g3962 527 SMART ringv_2 260 309 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3962 Tpr-Chr1 44277407 44282285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3962 246 315 C3H Transcription Factor Family AT2G37950 40.845 3.26e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3962 - - gmx:100787963 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3962 1 44277407 44282285 Tpr1g3962 1 44277407 44282285 ECH