Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3960 ATGGGTAATAGTGGTTCTAACAATCGTCGGAGACACGGTGGCGGTGGAGGTGGTCGCCGAGTTCATCCTCCGGTCACTCCTCCTCCACCTCCGCCACCGGAAGCTACGGCGAACCAATTTGTTTACCCTGCTGGTCCTACGCCGTATCAAAACTATCCGAATTACTATCCTCCGCCGGGATCTGTTCCGATGCCTTTGCCGGCACCGTATGACCACCATCACCGTGTTGCGATGGACCCAATGTGGGGCCGCTATCCAGCACCGCCACCTGCACCTTATGTGGAACATCGGAAAGCGGTTACTATAAAGAATGATGTTAACATCAAGAAGGAGACACTGAGGATTGAACCTGATGAGGAAAATCCTGGCCAATTTCTTGTTACTTTTACGTTTGATGCCACTGTTTCTGGAAGCATCACAGTACTTTTCTTTGCAAAAGAAGGTGATGGTTGTGTCCTTAACTCGACTAAGGAAAGCGCTCTTGCACCTGTTACTATAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAACAATCTGGAACTGGTATCACTCTTTCAATGTTCGAGGAATCCGAGTTATTGAAAGTGGGCGACCTAGACGTCTATCCTGTAGCAGTTAAAGCAGATGCATCTTCCGGTGACGTGAAAGGAACAAATGAAACTCCAACATCTGGTAATAAAACAAATACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTTGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAACTTCAGTAGAGAGTGACTTGGATGGGAATGACCCCGGAAAAGAGTGTGTTATCTGCTTATCAGAGCCTCGCGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGCGGATGTGCAAAGGTTTTAAGGTTCCAGACAAATAGATGTCCAATATGCAGACAACCAGTTGAGAGGCTGTTGGAGATCAAAGTTGGGCCTGAACCTGCCGAGTCCGAGGAGTGA 1044 0.4722 MGNSGSNNRRRHGGGGGGRRVHPPVTPPPPPPPEATANQFVYPAGPTPYQNYPNYYPPPGSVPMPLPAPYDHHHRVAMDPMWGRYPAPPPAPYVEHRKAVTIKNDVNIKKETLRIEPDEENPGQFLVTFTFDATVSGSITVLFFAKEGDGCVLNSTKESALAPVTINFQQGLGQKFRQQSGTGITLSMFEESELLKVGDLDVYPVAVKADASSGDVKGTNETPTSGNKTNTNSQITQAVFEKEKGEFRVKVVKQILLVNGMRYELQEIYGIGTSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPAESEE* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3960 347 MobiDBLite consensus disorder prediction 22 37 - -
Tpr1g3960 347 Pfam Zinc finger, C3HC4 type (RING finger) 286 332 - -
Tpr1g3960 347 PANTHER MAHOGUNIN 2 343 IPR045194 GO:0061630
Tpr1g3960 347 SMART ring_2 288 326 IPR001841 -
Tpr1g3960 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 337 IPR013083 -
Tpr1g3960 347 MobiDBLite consensus disorder prediction 1 42 - -
Tpr1g3960 347 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 287 327 IPR045195 -
Tpr1g3960 347 SUPERFAMILY RING/U-box 287 333 - -
Tpr1g3960 347 ProSiteProfiles Zinc finger RING-type profile. 288 327 IPR001841 -
Tpr1g3960 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 2 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3960 Tpr-Chr1 44247744 44251627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3960 83 307 C3H Transcription Factor Family AT3G09770 63.713 8.29e-95 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3960 - - gmx:100789032 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3960 1 44247744 44251627 Tpr1g3960 1 44247744 44251627 ECH