Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3959 ATGAAGTTCTCAATTTTTTCTTGTTTCTCTTCTCAAAATAACAACAACAAAAACGATTACCCCGAGGCAGAGAATGATGGAAGCTTTCGTGTATTTACTTATCATCAATTGAAATTAGCTACTGGTAATTTTGGTAACAAGATTGGAGAAGGTGGATTTGGCTCTGTTTATAAGGGGAGGCTCGTGGATGGATCTTCTGTGGCAGTGAAAGTGCTTTCTATTGAGATTGAATCGATGCGAGGAGAGAGGGAATTTGTTGCAGAATTGGCTACACTAGCAAATATAAAGCACCAAAATCTTGTTAGCCTTAAAGGGTGTTGTGTTGAAGGGGCAAAAAGATATTTAGTCTATGATTACATGGAAAACAATAGCCTCCATCACACTTTCTTAGGTTCTGAGGATAGAAGGATGAGATTCAGTTGGGAAGCAAGGAGGAATATATCAATAGGTGTGGCTTCTGGAGTTTCCTATCTCCATGAGGAGTTGAAGCCTCATATAGTACACAGAGACATCAAAGCCAAAAATATACTCATTGACAGAAATTTTACACCAAAAGTTTCCGATTTTGGTTTGGCCAAATTAATGAGAGATGAAACATCTTACATTAGCACTAAAGTTGCGGGGACATTGGGTTATTTGGCTCCAGAATATGCTAGTTCAGGACAACTAAGAAGAAAATCAGATGTTTATAGCTTTGGAGTATTGCTTTTACAAATTGTTACTGGCTTGGCTGTTGTTGATGCTTATACAGATATTGAACGTTTCATTGTAGAAAAGGCTTGGGCAGCTTATGAGGCCAATGATCTATTAAGAATAGTGGATGCTGTGCTTAATACAAACTATTCAGCAGAAGAAGCCATAAAATTCCTCAAAGTTGGATTACTTTGCGTGCAAGAAACTGCAAAACTTAGACCACGAATGTCAGAGGTTGTAGAAATATTGACCAACAATATTGATACTATGAAGGATGTTCACATTTCAAAACCAGGATTTGTTGCTGATCTCAGAAACATCAGAATAAAACAACACATGACAACAGACTCGCCGCAAGGATCTAGTTCTTCAGGAACAAGCTTTGCAAGCTCCGTTTGGAGTGTTAAAAATCTCGCTCGTTGA 1116 0.3808 MKFSIFSCFSSQNNNNKNDYPEAENDGSFRVFTYHQLKLATGNFGNKIGEGGFGSVYKGRLVDGSSVAVKVLSIEIESMRGEREFVAELATLANIKHQNLVSLKGCCVEGAKRYLVYDYMENNSLHHTFLGSEDRRMRFSWEARRNISIGVASGVSYLHEELKPHIVHRDIKAKNILIDRNFTPKVSDFGLAKLMRDETSYISTKVAGTLGYLAPEYASSGQLRRKSDVYSFGVLLLQIVTGLAVVDAYTDIERFIVEKAWAAYEANDLLRIVDAVLNTNYSAEEAIKFLKVGLLCVQETAKLRPRMSEVVEILTNNIDTMKDVHISKPGFVADLRNIRIKQHMTTDSPQGSSSSGTSFASSVWSVKNLAR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3959 371 PANTHER RECEPTOR-LIKE KINASE 6 340 - -
Tpr1g3959 371 SMART serkin_6 42 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3959 371 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Tpr1g3959 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Tpr1g3959 371 Gene3D Phosphorylase Kinase; domain 1 13 119 - -
Tpr1g3959 371 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Tpr1g3959 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 340 - -
Tpr1g3959 371 Pfam Protein kinase domain 45 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3959 371 ProSiteProfiles Protein kinase domain profile. 42 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3959 371 CDD STKc_IRAK 48 316 - -
Tpr1g3959 371 SUPERFAMILY Protein kinase-like (PK-like) 17 314 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3959 Tpr-Chr1 44231266 44235353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3959 32 318 Receptor kinase-like Gene Family AT1G53430 50.515 1.20e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr1g3959 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3959 - - gmx:100813945 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3959 1 44231266 44235353 Tpr1g3959 1 44231266 44235353 ECH