Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3954 ATGACTTTTCAGAAATTTTGCAGTGAAAGTTTTTTGAAGATGAATACATTTATGGATTCAAGGGAAAATAATAATAATAAGTCATCAGAAGAAGTTGAAAGGTGTTTAGATCCTCAGCTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACCTGTTAACTTCATCAATTGTCCAAAAGTTTCACCTTTGATTCCATGCAAAGTTGTTTCTATCAAGTACATGGCTGATCCTGAAACTGATGAGGTTTATGCAAAGCTTAAGCTTTTTCCTTTGAGTGGAAATGGAAATGGAAATGATGTTCAAGATTATTATTGCAATGATGTTGTTGAAAATCAAGATAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAATAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCCGAGACGATTTTCCCTCGTTTGGATTACGCGGCTGATCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCACGGCGAGACGTGGAAGTTTAGGCATATTTATAGAGGGACGCCGAGGCGACATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTATTGCCGGGGATTCAATTGTGTTTTTGAGGGCAGAAAACGGTGATCTTTGTGTTGGGATTCGTCGAGCGAAAAAGGGTATCGGTGGTGGACATGAGGATCCTTCAGGGTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGATGAGAAACATTAACGACAATAACAGAAACGGTTTGAACTCAAGCCCAAATGTAACGGGGAGGGCAAAAGTTAGGCCAGATGCGGTCCTGGAAGCGGTAACTCTAGCTGCGAATAAGCAACCATTTGAGGTTGTTTACTACCCTCGCGCAAGTACACCCGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCGGCAATGCAGATGCGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTTGAAACCGAGGACTCGTCTCGAATTAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTTTGGCCCAACTCACCTTGGAGGCTTCTCCAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTGAGAAGGGTAAGTCCATGGTTAGTTGAATTGGTTGCAAACATTCCTTCCATAAACCTTTCCCCTTTCTCGCAACCAAGGAAGAAATTGAGATTGTCGCCGCACCAAGATTTCCCCTTTGACAGCCAAATTCCGGTGCCGACGTTTCCAAATAACCTTCTAGGTCCGAGTAACGTATTTCGTTGTCTACCCGAAAATACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTTCCAATATCGGATCACCACCTCAGTAAAGTTCAGTCAGGTCTATTTTCGGCCGGTTTCGTGCCTTTTGATCATGCTACTAAACTACCTACTGTCTCTAATAACCTAATGATGCAAAAATCTAGCATGAGTGAGAATGTGTCTTGCTTATTATCTATGGCAAGTTCTACTCAGTCTTCGCAGAAATTCGATGACAAAAAACCTCAGCTTGTTCTTTTCGGCCAAAAAATTCTCACTGAGCAACAGATCTCTGGTGTTCGTTCATCAGATGGAAATGCCGATAAAATGAGTAACTTCTCCGATGGTTCGCGAACTCCTCTTCATCAACAAGGCTTACAGAAACACCCCTCTTGTGACAGTTTCCCAAGGTATAAGGATAACAACCAAGAAACTGAGACGAGTTTGGAGAGTACTACTGATCACTGCAAAGTTTTTCTCGAATCGGAAGATGTTGGTCGGACAATTGACCTCTCTTTACTTGAGTCTTATGATGAACTGTACAGAAAGCTGGCAGAGATGTTTGGCATAGATAAATATGAGAAGGTAAGTCGCGTGCTCTACCGGGATATATCAGGAGCAGTCAAAAACATTGGAGATGAACCATTCAGTAAATTTACAAGAACAGCAAGGAGGTTGACTATTCTAATGGATTCAAGAAAATAA 2100 0.4186 MTFQKFCSESFLKMNTFMDSRENNNNKSSEEVERCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHACGPVNFINCPKVSPLIPCKVVSIKYMADPETDEVYAKLKLFPLSGNGNGNDVQDYYCNDVVENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPSGWNPVGENFPLPWFTQNENQMMRNINDNNRNGLNSSPNVTGRAKVRPDAVLEAVTLAANKQPFEVVYYPRASTPEFCVKAPLVEAAMQMRWCSGIRFKMAFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRLSPHQDFPFDSQIPVPTFPNNLLGPSNVFRCLPENTPAGMQGARHAHYGLPISDHHLSKVQSGLFSAGFVPFDHATKLPTVSNNLMMQKSSMSENVSCLLSMASSTQSSQKFDDKKPQLVLFGQKILTEQQISGVRSSDGNADKMSNFSDGSRTPLHQQGLQKHPSCDSFPRYKDNNQETETSLESTTDHCKVFLESEDVGRTIDLSLLESYDELYRKLAEMFGIDKYEKVSRVLYRDISGAVKNIGDEPFSKFTRTARRLTILMDSRK* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3954 699 Pfam B3 DNA binding domain 139 240 IPR003340 GO:0003677
Tpr1g3954 699 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677
Tpr1g3954 699 Pfam Auxin response factor 305 388 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr1g3954 699 SMART B3_2 139 241 IPR003340 GO:0003677
Tpr1g3954 699 Gene3D - 137 241 IPR015300 -
Tpr1g3954 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 695 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr1g3954 699 CDD B3_DNA 138 239 IPR003340 GO:0003677
Tpr1g3954 699 ProSiteProfiles PB1 domain profile. 618 699 IPR000270 GO:0005515
Tpr1g3954 699 Gene3D - 342 416 - -
Tpr1g3954 699 PANTHER AUXIN RESPONSE FACTOR 26 695 - -
Tpr1g3954 699 SUPERFAMILY DNA-binding pseudobarrel domain 131 272 IPR015300 -
Tpr1g3954 699 Gene3D - 614 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3954 Tpr-Chr1 44078388 44083922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3954 32 696 B3 DNA Binding Superfamily AT4G30080 55.096 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr1g3954 B3 4.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3954 - - gmx:100796522 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1010 1 8844158 8847596 Tpr1g3954 1 44078388 44083922 ECH
Tpr1g3954 1 44078388 44083922 Tpr1g1010 1 8844158 8847596 ECH
Tpr1g3954 1 44078388 44083922 Tpr1g3954 1 44078388 44083922 ECH
Tpr1g3954 1 44078388 44083922 Tpr4g1681 4 17362216 17366598 ECH