LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g3948	ATGGCTTCTGTTATATCAAGATCTGTAAGGTTTCATGACAATCTTGAAAAAGTGAAATTAAACGAAGTTGAAGAAAATCACATGGAAATGATGACCTATGAGACGAGTGATCAACACAAGCGTGTAAGGGACGCAAAAAACAAGTCATCAAATGGAAGAGAACTTTCGAGGGTGTTTTCTGAAGATTATGATGCAGAAGAGATTTTAGTATTAGACCCTAGAGGACCTAGAGTAAATTTATGGAACAAAATATTCTTAGCAGCTTGTTTGATTTCATTGTTTGTGGATCCACTTTTCTTTTACTTACCAGTTGTTAAGAAAGAAAAATGCATTGATATGTCACTTGGTCTTGAAGTTTCACTTACCATAATTAGGACATTGGTTGATGCATTTTACATCATTCAGATTTATGTTAGGTTTCAAACTGCTTATATTGCCCCTTCATCTCGTGTTTCTGGTAGAGGAGAACTTATTATAGATTCCTCAAAGATTGCTTCAAATTATATGAGTAGAGACTTTTGGTTTGATCTTGTTGCTGCTCTACCACTTCCTCAGGTACTGATTTGGGCTGTAATTCCAAATTTGAAGGGGTCAGAAATGATCGCATCAAGGCAAATATTGCGCCTTGTGTCCATTTTCCAGTACTTATTGAGGTTATATCTTATTTATCCTCTTTCATCTGAAATCACCAAGGCAAATGGAGTAATGATGGAAAAAGCTTGGGCAGGTGCAGCTTATAATTTGACACTCTATATGCTTGCTAGTCATGTTTTAGGATCTACCTGGTACCTGTTATCAATTGAAAGACAAGATGAATGTTGGAAGAAAGCTTGTACACTTGAATATCCACATTGTCGGTATCATTATCTCGACTGTCAAAGCATAAGTGATCCAAATAGAAATGCATGGCTTAGATCAAGCAATCTATCAGGACTATGTGATCAGAACAGTGACTTCTTTCAGTTTGGAATTTTTGCTGATGCTCTTACATTGGAAATAACTGGCTCGAAATTCTTAAACAAATACTATTACTGTCTTTGGTGGGGATTGAGGAATCTAAGCTCTGCAGGACAGAATCTCTTAACAAGTACACATGTTCCAGAGATTAATTTTGCTGTGATTGTTGCAATTCTTGGATTAGTGCTTTTTGCACTACTCATAGGAAATATGCAAACCTACCTTCAATCCACCACTATACGGCTTGAAGAGTGGAGGATAAGAAGAACAGATACAGAAAGATGGATGCATCACAGGCAACTCCCATGTTACTTGAAGCAAAGTGTCCGACGTCATGACCAATTCAGATGGGTAGCTACTCGTGGAGTTGACGAGGAAGCTATTCTCAGAGACCTACCTGTTGATCTCAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTACCACTATTTGATCAAATGGATGACAGGATGTTAGATGCAATATGTGAAAGGCTGAAACCAACTCTATGCACTCCAGGAACTTGCATAGTCCGTGAATGCGACCCTGTCAACGAAATGCTCTTCATCGTTCGAGGACGCTTAGATTCTTGCACAACCAACGGTGGCAGAACAGGCTTCTTCAACACCTGCAGAATAGGCTCGGGTGATTTCTGCGGTGAAGAGCTTCTCCCGTGGGCCTTAGACCCTCGTCCAACCGCTGTACTTCCTTCGTCAACTAGAACGGTAAAAGCCATCATCGAAGTCGAAGCTTTTGCACTCATTGCAGAGGACTTAAAGTTTGTTGCGGCACAATTCCGCAGGTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCACATCAGTGGCGGACATGGGCTGCATGTTTTATACAAGCGGCTTGGTTTCGGTATAAGAGAATGAAAGAGACAAATGAGGTTAAGGAAAAGGAGAATGTTATGATGATGGCGACCAATGGGAAATATTATGGAAATGATGATAGTCAATATTTCTCTGCACCTCTGCAGGTTCCAATGGGATCAAGTTATCCAATGTATTCCGGGAAACTTGTAGGTAATCTAAGGAGAGGTAGGAGCATGAGATATGGTTCTGAACTTGATATTCTTGGTGGATTAAGGAAGCCCGTTGATCCAGATTTTAATGATGATGGTGGTTAA	2133	0.398	MASVISRSVRFHDNLEKVKLNEVEENHMEMMTYETSDQHKRVRDAKNKSSNGRELSRVFSEDYDAEEILVLDPRGPRVNLWNKIFLAACLISLFVDPLFFYLPVVKKEKCIDMSLGLEVSLTIIRTLVDAFYIIQIYVRFQTAYIAPSSRVSGRGELIIDSSKIASNYMSRDFWFDLVAALPLPQVLIWAVIPNLKGSEMIASRQILRLVSIFQYLLRLYLIYPLSSEITKANGVMMEKAWAGAAYNLTLYMLASHVLGSTWYLLSIERQDECWKKACTLEYPHCRYHYLDCQSISDPNRNAWLRSSNLSGLCDQNSDFFQFGIFADALTLEITGSKFLNKYYYCLWWGLRNLSSAGQNLLTSTHVPEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPCYLKQSVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVRECDPVNEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVKAIIEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENVMMMATNGKYYGNDDSQYFSAPLQVPMGSSYPMYSGKLVGNLRRGRSMRYGSELDILGGLRKPVDPDFNDDGG*	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g3948	710	SMART	cnmp_10	473	604	IPR000595	-
	Tpr1g3948	710	Gene3D	Jelly Rolls	471	591	IPR014710	-
	Tpr1g3948	710	SUPERFAMILY	cAMP-binding domain-like	403	594	IPR018490	-
	Tpr1g3948	710	Gene3D	Helix hairpin bin	401	464	-	-
	Tpr1g3948	710	Gene3D	-	86	397	-	-
	Tpr1g3948	710	PRINTS	EAG/ELK/ERG potassium channel family signature	136	145	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Tpr1g3948	710	PRINTS	EAG/ELK/ERG potassium channel family signature	253	263	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Tpr1g3948	710	PRINTS	EAG/ELK/ERG potassium channel family signature	342	359	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Tpr1g3948	710	PRINTS	EAG/ELK/ERG potassium channel family signature	368	379	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Tpr1g3948	710	PRINTS	EAG/ELK/ERG potassium channel family signature	386	395	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Tpr1g3948	710	PRINTS	EAG/ELK/ERG potassium channel family signature	436	443	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Tpr1g3948	710	ProSiteProfiles	cAMP/cGMP binding motif profile.	473	558	IPR000595	-
	Tpr1g3948	710	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	18	707	-	-
	Tpr1g3948	710	SUPERFAMILY	Voltage-gated potassium channels	72	395	-	-
	Tpr1g3948	710	CDD	CAP_ED	473	604	IPR000595	-
	Tpr1g3948	710	PANTHER	PROTEIN CNGC15A	18	707	-	-
	Tpr1g3948	710	Pfam	Ion transport protein	80	399	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g3948	Tpr-Chr1	43938544	43943836	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g3948	45	648	Ion Channels	AT2G28260	66.993	0.0	880

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g3948	K05391		-	gmx:100815543	1153.66

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr1g3948	1	43938544	43943836	Tpr1g3948	1	43938544	43943836	ECH