Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3947 ATGTCTACCTCTGCAACTTCCTTAGCATTTCCATCTCTCTTCACCAAAAACCCTCTCTGTTCTTCTCCCCAATGTTTCTCTTCACTCCCTTCCCTTTCACTCAACCCTAATTTCAAACCAATTTCCATTTCCTCTGTTTCTCTCCGTTCAACTTTGTCTAACCGTTTCGTTTCTCGTGTTGCCGTTTCGTCTGAATTCGACCAAGAAGAAGATACCTTTGATGATGATAGACGTAGTTACTCTGCCGAACAGAGGTTGTTTGTTGGTAACCTTCCTTTCAGTGTTGACAGTGCTCAACTTGCTGAGATATTTGATAATGCTGGAAATGTTGAGATGGTTGAGGTTATTTATGATAAAACTTCTGGAAGAAGCAGGGGATTTGGTTTTGTGACTATGTCTTCGGCTGAGGAAGCTGAAGCTGCTGCTCAGCAGTTAAATGGCTATGAAGTGGATGGAAGGCAATTGAGAGTGAATGCTGGACCACCTCCACCTCGTACCGAGAACTCACGTTTTGGTGACAATCCTCGTTTTGGTGACAGGAGAGGTCCTCCAAGAGGTGGTTCTTCTGCAGGTAGCGAAAACCGTGTTCATGTTGGCAATCTTGCCTGGGGTGTTGACAACTTGGCACTTGAGAGATTGTTTAGCCAACAAGGAACGGTTATAGAAGCTAAGGTAATCTATGACAGGGAGAGTGGTAGATCTAAAGGCTTTGGATTTGTGACTTACGGTAGCGCTGAAGAGGTCAACGGTGCTATTCGGTCCTTAGATGGCGTGGACTTGAATGGAAGAGCCATACGGGTCGCGCCGGCTGATAGTTCTAGTAGACCAAAGCGTGAATTTTGA 843 0.4531 MSTSATSLAFPSLFTKNPLCSSPQCFSSLPSLSLNPNFKPISISSVSLRSTLSNRFVSRVAVSSEFDQEEDTFDDDRRSYSAEQRLFVGNLPFSVDSAQLAEIFDNAGNVEMVEVIYDKTSGRSRGFGFVTMSSAEEAEAAAQQLNGYEVDGRQLRVNAGPPPPRTENSRFGDNPRFGDRRGPPRGGSSAGSENRVHVGNLAWGVDNLALERLFSQQGTVIEAKVIYDRESGRSKGFGFVTYGSAEEVNGAIRSLDGVDLNGRAIRVAPADSSSRPKREF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3947 280 MobiDBLite consensus disorder prediction 150 194 - -
Tpr1g3947 280 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 277 - -
Tpr1g3947 280 PANTHER OS02G0815200 PROTEIN 1 277 - -
Tpr1g3947 280 SMART rrm1_1 195 268 IPR000504 GO:0003723
Tpr1g3947 280 SMART rrm1_1 85 158 IPR000504 GO:0003723
Tpr1g3947 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Tpr1g3947 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Tpr1g3947 280 Gene3D - 61 190 IPR012677 -
Tpr1g3947 280 Gene3D - 191 279 IPR012677 -
Tpr1g3947 280 SUPERFAMILY RNA-binding domain, RBD 84 189 IPR035979 GO:0003676
Tpr1g3947 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Tpr1g3947 280 SUPERFAMILY RNA-binding domain, RBD 193 275 IPR035979 GO:0003676
Tpr1g3947 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3947 Tpr-Chr1 43933133 43935645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3947 86 280 Eukaryotic Initiation Factors Gene Family AT1G49760 28.643 8.36e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3947 - - gmx:100786275 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3947 1 43933133 43935645 Tpr1g3947 1 43933133 43935645 ECH
Tpr6g3459 6 37322920 37326590 Tpr1g3947 1 43933133 43935645 PCT