Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3945 ATGGAGGGAATTACCAATGGCCATGCTGAAGCAACTTTTTGCGTGACCAAAAGTGTTGGTGATCCACTCAACTGGGGTGCAGCGGCAGAGTCGTTGACGGGGAGTCATTTGGATGAGGTGAAGCGTATGGTTGAGGAGTACCGTAACCCGCTGGTTAAAATTGGCGGCGCGACGCTTACCATTGCTCAGGTGGCTGGAATTGCTTCTCATGATAGTGGTGTAAGGGTGGAGTTGTCTGAGTCCGCGAGGGCCGGCGTTAAGGCGAGTAGTGATTGGGTGATGGACAGCATGAACAATGGGACTGATAGTTATGGTGTTACCACCGGTTTTGGTGCCACCTCTCACCGGAGAACCAAGCAGGGCGGTGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAATCTAATTGTACACTACCACACACAGCAACTAGAGCTGCAATGCTTGTGAGAATCAATACTCTTCTTCAAGGGTACTCTGGAATTAGATTTGAAATTTTGGAAGCTATCACTAAGCTCCTAAACAACAACATTACCCCATGTTTACCACTTCGCGGTACAATCACTGCTTCGGGTGATCTTGTTCCACTTTCTTACATTGCCGGTTTGTTAACCGGAAGACCCAACTCCAAAGCCGTTGGACCTTCCGGAGAAATTCTCAATGCCAAAGAAGCATTTCAACTGGCGGGCATTGGTTCTGAGTTTTTCGAATTGCAACCAAAAGAAGGTCTTGCTCTTGTTAATGGCACCGCGGTTGGTTCTGGTTTAGCTTCTATTGTTCTATTTGAAGCAAATGTACTAGCCGTGTTGTCGGAAGTTATGTCAGCAATTTTTGCTGAAGTTATGCAAGGGAAGCCAGAATTCACCGATCATTTGACTCATAAGTTGAAGCATCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAACATATTTTGGATGGAAGTGCTTATGTTAAAGCAGCTAAGAAGTTACACGAAACTGATCCATTACAAAAGCCTAAACAGGATCGTTATGCACTTAGAACTTCACCTCAATGGCTTGGTCCTTTGATTGAAGTGATAAGATTTTCAACCAAGTCAATTGAGAGAGAAATTAACTCAGTCAATGACAATCCTTTGATTGATGTTTCAAGGAACAAGGCCATTCATGGTGGTAACTTTCAAGGAACACCTATTGGAGTTTCAATGGATAACACACGTTTAGCTCTTGCTTCAATTGGTAAACTCATGTTTGCTCAATTCTCTGAACTTGTTAATGATTTTTACAACAATGGGTTGCCTTCGAATCTCACTGCTAGTAGGAACCCAAGTTTGGACTACGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCTGAGTTACAATATCTTGCTAATCCTGTCACCACCCATGTCCAAAGTGCAGAGCAACACAACCAAGATGTTAACTCTTTGGGTTTGATTTCTTCTAGAAAAACAAATGAATCTATTGAAATCTTAAAGCTCATGTCTTCCACTTTCTTGATTGCTCTATGTCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAGAAACACTGTCAAGAACACTGTAAGCCAAGTAGCTAAGAGAACACTCACCACCGGTGTCAACGGAGAACTTCATCCATCTAGATTTTGTGAGAAAGATTTGCTCAAAGTTGTTGATAGGGAATATGTATTTGCCTATGCTGATGATCCTTGTTTAGCTACATACCCTTTGATGCAAAAGCTGAGACAAGTGCTTGTGGATCATGCATTGGTAAATGTTGATGGAGAGAAGAATTCAAACACATCCATCTTCCAAAAGATTGCAACTTTTGAAGATGAGTTGAAAGCTATCTTGCCAAAGGAAGTTGAAAGTACAAGGGTTGCATATGAAAATGGACAATGTGGAATTTCAAACAAGATTAAGGAATGCAGGTCTTATCCATTGTACAAGTTTGTTAGAGAGGAGTTGGGAACCGCGTTGCTAACCGGAGAAAAAGTGATATCGCCGGGCGAAGAGTGTGATAAATTGTTCACAGCTATGTGCCAAGGTAAAATTGTTGATCCTCTTTTGGAATGCATGGGAGAGTGGAACGGTGCTCCTCTTCCAATATGTTAA 2139 0.424 MEGITNGHAEATFCVTKSVGDPLNWGAAAESLTGSHLDEVKRMVEEYRNPLVKIGGATLTIAQVAGIASHDSGVRVELSESARAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFQLAGIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLIALCQAIDLRHLEENLRNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYADDPCLATYPLMQKLRQVLVDHALVNVDGEKNSNTSIFQKIATFEDELKAILPKEVESTRVAYENGQCGISNKIKECRSYPLYKFVREELGTALLTGEKVISPGEECDKLFTAMCQGKIVDPLLECMGEWNGAPLPIC* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3945 712 SUPERFAMILY L-aspartase-like 21 712 IPR008948 GO:0003824
Tpr1g3945 712 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 21 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Tpr1g3945 712 Gene3D - 525 646 IPR023144 -
Tpr1g3945 712 Pfam Aromatic amino acid lyase 59 533 IPR001106 -
Tpr1g3945 712 CDD PAL-HAL 58 522 IPR001106 -
Tpr1g3945 712 PANTHER HISTIDINE AMMONIA-LYASE 17 712 IPR001106 -
Tpr1g3945 712 Gene3D Fumarase/aspartase (Central domain) 259 707 - -
Tpr1g3945 712 Gene3D - 13 258 IPR024083 -
Tpr1g3945 712 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 17 712 - -
Tpr1g3945 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3945 Tpr-Chr1 43803600 43809252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3945 21 712 Monolignol Biosynthesis Gene Families AT2G37040 83.237 0.0 1230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3945 K10775 - gmx:100302735 1284.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1022 1 8982629 8989854 Tpr1g3945 1 43803600 43809252 ECH
Tpr6g0906 6 7932825 7936069 Tpr1g3945 1 43803600 43809252 ECH
Tpr1g3945 1 43803600 43809252 Tpr1g1022 1 8982629 8989854 ECH
Tpr1g3945 1 43803600 43809252 Tpr1g3945 1 43803600 43809252 ECH
Tpr6g0905 6 7925957 7929212 Tpr1g3945 1 43803600 43809252 PCT