Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3942 ATGAAGTCAAGATTTTTGAAAGGGTGTATTAACAAATGCAAGAAAGTGGGAAGTGTAGTAAAAACTTGTGCTACTTGTGAAGATTGTTGTGAAAGGGGTTTATGGTCTTCTATTCATGAAAGTAGCTCCATACCAAGTGATGTTCCAAAAGGTCACATGGTTGTATACATAGGTGAGAATCACAAGAGATATGTGATTAAAATTGCATTGCTTCATCATCCACTTTTCAAGGCCTTGTTGGATCAAGCTCAAGAAGAGTATGATTTCATTGCTGATTCAAAACTATGTATTCCTTGTGATGAACATCTTTTCCTAAGTGTCCTTCGTTGTGCTAGTTCTCCACAGAATCAAAGGGTGTGTTTGTGTCTTTGA 372 0.3683 MKSRFLKGCINKCKKVGSVVKTCATCEDCCERGLWSSIHESSSIPSDVPKGHMVVYIGENHKRYVIKIALLHHPLFKALLDQAQEEYDFIADSKLCIPCDEHLFLSVLRCASSPQNQRVCLCL* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3942 123 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 2 123 - -
Tpr1g3942 123 Pfam Auxin responsive protein 37 110 IPR003676 GO:0009733
Tpr1g3942 123 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 2 123 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3942 Tpr-Chr1 43781504 43781942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3942 10 118 Calmodulin-binding Proteins AT4G34750 40.351 1.94e-22 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3942 K14488 - gmx:100812927 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3942 1 43781504 43781942 Tpr1g3942 1 43781504 43781942 ECH