Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3941 ATGGACCGGGATGAATATTTGCGGAAGTGTTCCAATATGAAATGTCAAAGAGTTCAGGTGGAGGGATCATATGTGCCTTCCCTTCAAGATGATGAAATGGAAGTTGAACATTTGTTTGAAGAGCCTAGAAATGATTATGTTTCGTTGGATGGTAGTTTAGCTTCTTATACAGCTTTGAATGACAAGGACGATTTGCAACTTGAGGTCCTTGATGATTTCCTGGATGATGGATTCCTGGATGATGTTGAAATCGACAATTTTGAAGGAACTGATGGTTTCTCTGATGCACGTGGAGGGTATTTCTTAGATTTTGATTTTGCCAAAGTTGAGTTACTAGGTTCTGGTGCTAATGAAGACTCGCCTGTGGAAAACTCAAATTCGGAAAGTCAATCTCCTGGAGTTAGTGGAAGTAGCACTGTTGGTGGGATATCAGAATCAACAAAAGTACTACCAAATAGTACACAATCTAAATGCAAAATTGAATCTCTAGATGAGACTGGCCCCCATGATACAAATGGTATCATCAGGAACAATCCAAGTCAACCATCAAATGTAGATTGCATGTACAACATTTCACTTGATATACAGCATCTGCATGAGTTGAATAACGGTTATCCTTTAGCTGGTGGTATATTGTCTTGTAAGAAGGAAAATGTTACTGTTGAAAATTGCCAATCTGCTCCACCTAGAGAGAAGAGATTCCGAAAGCCTACACAGAGGTATATTGAAGAATCTTCAACTTTAAAGTCAAAAGAAAAGGTACGAACTACTGGTGCAAAAAAGAAACGACGAAGTGTGTCATGTAGTGAACTTCATACCAGAACTAAAAGATTGGAAAATATTCCAATCGAAAAGTTTAGTGACAATATTCCAATCGAAAAGTTTAGCGATTCTGATAGTGATGTGACACTTTCTGAGTTACAACACTGCATGAAGTATCCAAAGAAAGAGAAACTAGACTATGACTATGAGTCTTTTTCCTCGGAGGAGTCCTCGGATGAAGAATTGACACCAAAAAGATGTAGAACAAAAGATCGAAGAAAGAATCAAAGGATGTGGACAACCTCTGAAGTGACGAAGTTGATGGATGGTATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGGTTTTTGTTTTCTGCTGCAGGCTACCGAACTCCCACAGATATCAGGGACAAGTGGCGTAACCTTTTACGAGCCTGTTCATCACAGAGATTCAACAAGAAAGAAGAGGGCGAACAAGATGACGAGAATTCCCCTCGAACCTTACCTCTTAGTGTGGCAAGCCGAGTGCTGGAATTGTCTAAAATTCATCCATACCCAAATCGACGAAACAAAAAGAGATCATTTCCTGGCATTGCTAATCAAAGCAATCGTTCAAGAAGAAATGTACGTAGGAAGAAGTGTACTTAG 1419 0.3939 MDRDEYLRKCSNMKCQRVQVEGSYVPSLQDDEMEVEHLFEEPRNDYVSLDGSLASYTALNDKDDLQLEVLDDFLDDGFLDDVEIDNFEGTDGFSDARGGYFLDFDFAKVELLGSGANEDSPVENSNSESQSPGVSGSSTVGGISESTKVLPNSTQSKCKIESLDETGPHDTNGIIRNNPSQPSNVDCMYNISLDIQHLHELNNGYPLAGGILSCKKENVTVENCQSAPPREKRFRKPTQRYIEESSTLKSKEKVRTTGAKKKRRSVSCSELHTRTKRLENIPIEKFSDNIPIEKFSDSDSDVTLSELQHCMKYPKKEKLDYDYESFSSEESSDEELTPKRCRTKDRRKNQRMWTTSEVTKLMDGISEYGVGRWTDIQRFLFSAAGYRTPTDIRDKWRNLLRACSSQRFNKKEEGEQDDENSPRTLPLSVASRVLELSKIHPYPNRRNKKRSFPGIANQSNRSRRNVRRKKCT* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3941 472 MobiDBLite consensus disorder prediction 330 349 - -
Tpr1g3941 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 345 404 IPR017930 -
Tpr1g3941 472 Gene3D - 339 452 - -
Tpr1g3941 472 CDD SANT_TRF 351 401 - -
Tpr1g3941 472 MobiDBLite consensus disorder prediction 332 349 - -
Tpr1g3941 472 MobiDBLite consensus disorder prediction 243 267 - -
Tpr1g3941 472 SUPERFAMILY Homeodomain-like 347 407 IPR009057 -
Tpr1g3941 472 MobiDBLite consensus disorder prediction 438 472 - -
Tpr1g3941 472 Pfam Myb-like DNA-binding domain 353 400 IPR001005 -
Tpr1g3941 472 SMART sant 349 402 IPR001005 -
Tpr1g3941 472 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 8 470 - -
Tpr1g3941 472 MobiDBLite consensus disorder prediction 118 156 - -
Tpr1g3941 472 PANTHER TRF-LIKE 8 8 470 - -
Tpr1g3941 472 MobiDBLite consensus disorder prediction 115 156 - -
Tpr1g3941 472 ProSiteProfiles Myb-like domain profile. 345 400 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3941 Tpr-Chr1 43764860 43771207 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr1g3941 Myb_DNA-binding 3.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3941 - - gmx:100810255 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3941 1 43764860 43771207 Tpr1g3941 1 43764860 43771207 ECH