Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3940 ATGAGGAACTATGTTACCTTCATTCCTCTCTTTTTCTTCTTCTCCTTCACTCTGTTACCTACAATTCATTCTGCCGAAACTTTTGCCCCTTCCTTTTACACCGATGAAATCTACAAGGAACTTCAAAATATCGCTGTTCTTTTGAATAAGGATATTAAATCCAGTTTAGGTTTCTGCATTAAGGATGTGAAAAAAGATTGGGAGGAAGCTTTTGATTTTACAGGAAAGTTGGATTTCGTCGATTCATGTGTTAAGAAAAAAGGAGATTTCAGGGATCGTATATGTACTGCAGCTGAAATAAGGTACTACTTCCATGGTTTCGTGGTACAGGGAGCATCATCTGACAATTATGTAGAACCTAATAAGAATTGCAATTTGACCTCGTGGGTTGATGGTTGTGAACCTGGATGGGGTTGTAGTACGGGCGAGAATATTGACCTAAAAAAGGAATTAAAGGAAATTCCAAAGAGAACCAACAACTGTCAACCTTGTTGCGAGGGTTTTTTTTGTCCTCAAGGACTGACTTGTATGATACCTTGCCCACTAGGTTCTTATTGTCCACTTGCAAAACTGAACAGCGACACTGGACTATGTGAACCATATAGTTACCAGATACCTCAGGGAGAACCAGATCATACTTGCGGCGGTGCTGATATTTGGTCTGGTGTGATAAACAGTAGTGATATATTCTGTTCTCCCGGATCATACTGCCCAACTACAACACGTAAAGTTTCTTGCGATCGTGGATATTACTGCAGGATGGGTTCTACTCATCAGAACCTATGCTCCAAGTTCAGCCAATGTAATCCAAACACCGCAACGCAAAATATGCATGCTTATGGCGCTCTGCTTATTGTTGCATTGAGTACTGTCCTGATCATCATTTATAACTGTTCTGATCAAGTTCTTGCTACACGAGAAAGAAGGAAAGCTAAATCCAGAGAAGCTGCAGCAAGACAGGTAAGAGAAACCGTACAAGCTCGAGAAAGGTGGAAGATGGCAAAAGAAGCTGCTAAAAGGAATAAGCTGGGATTGCAAGATCAGCTAGTACGCACTTTTTCTCGCAAAAAATCAGCAAAGCAAGGGGAGCAAGTTGCTGTACCTCCAGAACAGTCATCTGCAGCCACAAAAGGCCAAACAAAGGAACCTAGCAACCTTACTAAAATGATGAATTCCTTTGAGAATGACCCTGCTAGTAATGAAGGATTCAATCTAAAAATTGGGGACAAAAATATTAAAAAGCAGATGCCAAAGGGAAAACAGTTACATACACAAAGCCAAATTTTAAGGTATGCTTATGGTCAGATTGAGAAAGAGAAAGCTCAACAAGAGAAACAAAATAACTTAACCTTCTCAGGAGTGATTTCAATGGCCGCTGAAGGTGAAGAGATTAGATCAAGGCCTGAGATCGAGGTAGCTTTCAAAGATTTAACTCTTACTTTGAAAGGGAAAAGAAAACATGTACTGAGGTGCGTGACAGGTAAAATCATGCCTGGTCGAGTTTCAGCTGTGATGGGTCCCTCAGGAGCTGGAAAAACTACATTTCTTTCTGCCCTGGCAGGGAAAATAAGAGGGTGCACTATGACAGGCTCAATTCTAGTCAATGGAAAACCTGAATCCATTCACTGTTATCAGAAAATTATTGGATATGTGCCACAAGATGATATTGTGCATGGGAACTTGACAGTGGAGGAAAATCTTCGTTTCAGTGCAAGATGCAGACTATCTGATGACATGCCAAAACCAGATAAGGTTCTGATTGTTGAAAGAGTAATTGAAACCTTGGGACTCCAGGCAATAAGAGATTCCCTTGTTGGGACAGTAGAGAGACGAGGCATATCTGGTGGGCAACGAAAACGTGTAAATGTAGGGTTGGAGATGGTTATGGAGCCTTCATTGTTAATCTTAGATGAGCCTACAACTGGTCTAGACAGTGCATCTTCGACTTTACTGCTGAAAGCACTTCGCCGTGAAGCTGCTGAAGGGGTAAACATCTGCATGGTGCTTCACCAACCTAGCTATACTTTATTCAGAATGTTTGATGATATAATATTTCTAGCAAAAGGTGGCCTTACTGCATATCACGGTCCTGTAAAAAAAGTAGAAGAATACTTTGCTGGCATTGGTATCCCTGTTCCTGATCGTGTGAATCCTCCGGATCATTTTATTGACATTTTGGAAGGTTTAGTGAAACCAAGTGAAACTGTGACTTATCAACAACTACCTGTCAGATGGATGCTTCATAATGGTTACACAGTACCACCAGATATGCTTCATTATGCTGATGAAATTTCTGCTTCATCGTCTTCCTCAAATGCAAATCAAGCAATAAAGACTGCTGATGAAGCTTCTGATCAATCATTTGCCGGAGAGTTTTGGGAGGATATGAAAAGTAATGTACAGTTGCGAAAAGATCATATCGAGGCAACCTTCTTAACGATTAAGGACTTATCTGGCCGAAGAACTCCTGGTGTAGCTCGGCAGTATAGATACTACGTTGGGCGGGTTGGTAAGCAGCAGCTGCGAGAAGCAAAATCACAAGCAGTTGACTATCTCCTTTTATTAGTTGCCGGTGCTATCTTGGGAACTCTTACTAAAGTAAATGATGAAACATTTGGGTCTCTTGGATATACATATACTGTCATTGCGGTTTCTCTACTTTCCAAGATTGCAGCTCTGAGATCATTTTCTCTGGATAAATTACAATACTGGAGAGAGAGTGCATCAGGGATCAGCAATTTGGCTCATTTTTTGTCCAAAGATACAATTGATCTTTTCAGTACAATAATCAAACCTCTCATTTATCTATCCATGTTCTACTTTTTTAGCAATCCAAGGTCAAGCTTCGGAAGTAATTATGCGGTTTTGGTATGCCTTGTATACTGTGTGACTGGCATGGCTTACGCATTAGCAATTTATTTTGAGCCTGCTCCTGCTCAGCTGTGGGCAGTGCTTCTCCCTGTTGTTATGACTCTCATTGCAAACCAGACAAGAGATACTCTCTTTATGAAGATCCTAATAAAGTTGTGTTACCCAAATTGGGCTTTGGAGGCCTTTATTATTGCAAATGCTGAAAGGTACACTGGGGTGTGGCTGATAACTCGTTGTAGTTCACTGATGAATAGCGGTTATAATGTCGGTGATTGGCCTATTTGTCTAGCTGTTCTCATTTTTTATGGTATAGTTGCCCGAATTGTGGCCTTTATTTGTCTCATGATCACCCAAAAGAAGTGA 3234 0.4082 MRNYVTFIPLFFFFSFTLLPTIHSAETFAPSFYTDEIYKELQNIAVLLNKDIKSSLGFCIKDVKKDWEEAFDFTGKLDFVDSCVKKKGDFRDRICTAAEIRYYFHGFVVQGASSDNYVEPNKNCNLTSWVDGCEPGWGCSTGENIDLKKELKEIPKRTNNCQPCCEGFFCPQGLTCMIPCPLGSYCPLAKLNSDTGLCEPYSYQIPQGEPDHTCGGADIWSGVINSSDIFCSPGSYCPTTTRKVSCDRGYYCRMGSTHQNLCSKFSQCNPNTATQNMHAYGALLIVALSTVLIIIYNCSDQVLATRERRKAKSREAAARQVRETVQARERWKMAKEAAKRNKLGLQDQLVRTFSRKKSAKQGEQVAVPPEQSSAATKGQTKEPSNLTKMMNSFENDPASNEGFNLKIGDKNIKKQMPKGKQLHTQSQILRYAYGQIEKEKAQQEKQNNLTFSGVISMAAEGEEIRSRPEIEVAFKDLTLTLKGKRKHVLRCVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKIRGCTMTGSILVNGKPESIHCYQKIIGYVPQDDIVHGNLTVEENLRFSARCRLSDDMPKPDKVLIVERVIETLGLQAIRDSLVGTVERRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSTLLLKALRREAAEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFAGIGIPVPDRVNPPDHFIDILEGLVKPSETVTYQQLPVRWMLHNGYTVPPDMLHYADEISASSSSSNANQAIKTADEASDQSFAGEFWEDMKSNVQLRKDHIEATFLTIKDLSGRRTPGVARQYRYYVGRVGKQQLREAKSQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLSKIAALRSFSLDKLQYWRESASGISNLAHFLSKDTIDLFSTIIKPLIYLSMFYFFSNPRSSFGSNYAVLVCLVYCVTGMAYALAIYFEPAPAQLWAVLLPVVMTLIANQTRDTLFMKILIKLCYPNWALEAFIIANAERYTGVWLITRCSSLMNSGYNVGDWPICLAVLIFYGIVARIVAFICLMITQKK* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3940 1077 MobiDBLite consensus disorder prediction 365 399 - -
Tpr1g3940 1077 CDD ABCG_EPDR 470 696 - -
Tpr1g3940 1077 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 472 713 IPR003439 GO:0005524
Tpr1g3940 1077 Pfam ABC transporter 492 640 IPR003439 GO:0005524
Tpr1g3940 1077 Gene3D - 460 707 IPR027417 -
Tpr1g3940 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 695 IPR027417 -
Tpr1g3940 1077 SMART AAA_5 498 690 IPR003593 -
Tpr1g3940 1077 MobiDBLite consensus disorder prediction 355 402 - -
Tpr1g3940 1077 PANTHER WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED 28 1073 - -
Tpr1g3940 1077 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 28 1073 - -
Tpr1g3940 1077 Pfam ABC-2 type transporter 670 1077 IPR043926 GO:0140359
Tpr1g3940 1077 ProSitePatterns ABC transporters family signature. 613 627 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3940 Tpr-Chr1 43748831 43760353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3940 499 692 Calmodulin-binding Proteins AT2G36910 28.218 9.72e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3940 - - gmx:100780238 1836.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1027 1 9024072 9031111 Tpr1g3940 1 43748831 43760353 ECH
Tpr1g3940 1 43748831 43760353 Tpr1g1027 1 9024072 9031111 ECH
Tpr1g3940 1 43748831 43760353 Tpr1g3940 1 43748831 43760353 ECH
Tpr1g3940 1 43748831 43760353 Tpr3g2621 3 25731085 25738504 ECH