Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3935 ATGAATTGTTTTCCGTTCAACATCTACTACGGAGAAAAGAAGGCTGATGCTAAAGGCTTGCAAATGCAATCACTATCGGGTCTATCGAACAACTCTACTTATGGTGGGAGTGAGGTGAGAAGAACTGGTTCTGACTTGGATGCCTCAGACAATAGCACAGACTCCCTCAGGAGGAGTGCATTTCCCAATTTGTCCCAAAGACCCAGCAACCTGAGAGTATTTACTGTATCTGAACTGAAATCAGCCACCAAGAATTTTGGTCGATCTGTTATGCTAGGTGAGGGTGGATTCGGGTGTGTCTACAAGGGATTGATCAAGAGTTCAGATGACCCGCCTAGTAAAATTGAAGTTGCAGTTAAGCAACTCGGTAAAAGAGGAATTCAGGGGCATAAAGAATGGGTAACTGAAGTGAATGTTCTAGGTATTGTTGAGCATCACAATCTTGTGAAACTAGTGGGCTATTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTTTGATATATGAATATATGCCCAACGGAAGCGTGGAACACCATTTATCACCACGATCAGAAACTCCTCTCTCATGGAGTAGGAGACTGAAAATAGCCCAAGATGCTGCTCGTGGCTTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCGAATATCCTTCTGGACGAGCAGTGGAATGCAAAGCTGTCTGACTTCGGATTAGCAAGATTGGGACCATCTGATGGGTTAACTCACGTTTCAACAGCGGTTGTAGGAACAATGGGGTATGCTGCTCCTGAATATATTCAAACTGGACGTCTCACTTCAAAGAGTGATGTATGGAGCTACGGAGTTTTTCTCTACGAACTCATTACTGGCAGGCGGCCTTTGGATCGAAATCGTCCCAAGAGTGAACAGAAGCTGTTGGAATGGATAAGACCATACCTTTCAGACGTGAAGAAATTTCAACTGATATTGGATCCAAGACTTGAGAGGAAACACCTCTCAAAGTCAGCCCAAAAACTTGCTTTAGTTGCCAACCGATGCTTGGTCAGAAACCCTAAGAATCGCCCGAAGATGAGTGAAGTATTAGAAATGATTGATCGGATTGTGGAATCTTCGGTTAGTGCTAATCCACAACCACCCTTGAATTGTGTAGCCTCAGCCGATGATTCTCAAGACACTGAAATAAAGAACAAGAAACGGACCATGGATTCAAAACCAGATTGTAATTGGTTTAGGATGTGGAGACCAAAGCTTTTAAGAACATGCTGA 1275 0.4314 MNCFPFNIYYGEKKADAKGLQMQSLSGLSNNSTYGGSEVRRTGSDLDASDNSTDSLRRSAFPNLSQRPSNLRVFTVSELKSATKNFGRSVMLGEGGFGCVYKGLIKSSDDPPSKIEVAVKQLGKRGIQGHKEWVTEVNVLGIVEHHNLVKLVGYCADDDERGIQRLLIYEYMPNGSVEHHLSPRSETPLSWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKSDVWSYGVFLYELITGRRPLDRNRPKSEQKLLEWIRPYLSDVKKFQLILDPRLERKHLSKSAQKLALVANRCLVRNPKNRPKMSEVLEMIDRIVESSVSANPQPPLNCVASADDSQDTEIKNKKRTMDSKPDCNWFRMWRPKLLRTC* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3935 424 Gene3D Transferase(Phosphotransferase) domain 1 172 384 - -
Tpr1g3935 424 MobiDBLite consensus disorder prediction 46 62 - -
Tpr1g3935 424 Pfam Protein tyrosine and serine/threonine kinase 91 366 IPR001245 GO:0004672|GO:0006468
Tpr1g3935 424 Gene3D Phosphorylase Kinase; domain 1 60 171 - -
Tpr1g3935 424 PANTHER OS01G0588500 PROTEIN-RELATED 9 415 - -
Tpr1g3935 424 ProSitePatterns Protein kinases ATP-binding region signature. 92 120 IPR017441 GO:0005524
Tpr1g3935 424 CDD STKc_IRAK 92 370 - -
Tpr1g3935 424 MobiDBLite consensus disorder prediction 29 62 - -
Tpr1g3935 424 ProSiteProfiles Protein kinase domain profile. 86 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3935 424 PANTHER KINASE 1B 9 415 - -
Tpr1g3935 424 SUPERFAMILY Protein kinase-like (PK-like) 63 367 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3935 Tpr-Chr1 43608846 43613740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3935 1 367 Glycoside Hydrolase AT3G07070 43.467 8.11e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tpr1g3935 PK_Tyr_Ser-Thr 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3935 - - gmx:100305438 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3935 1 43608846 43613740 Tpr1g3935 1 43608846 43613740 ECH
Tpr6g0901 6 7850549 7854541 Tpr1g3935 1 43608846 43613740 PCT