Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3930 ATGGCTAACCAACCTGAATCATCCGATTCCAAGGGAACGAAAAGAGACTTTAGTACTGCGATTCTCGAGCGGAAGAAGGCTCCGAATCGTCTCGTCGTCGATGAGGCCGTCAACGATGACAACTCCGTCGTCGCACTTCATCCTGATACTATGGAGAAACTTTCACTCTTTCGCGGTGATACCATTCTGATCAAGGGAAAGAAAAGAAAAGACACAATTTGTATTGCACTTGCTGATGAAACATGTGAGGAACCAAAGATAAGAATGAATAAGGTTGTTAGAAACAATCTTAGGGTTAGACTTGGAGATGTTGTTTCTGTTCATCAATGTCCTGATGTCAAATATGGAAAGCGAGTTCACATTCTTCCTGTGGATGATACTATTGAAGGAGTCACTGGGAATCTCTTTGATGCTTACTTAAAACCTTATTTCCTTGAGGCATATCGTCCAGTTAGGAAGGGTGATATGTTCCTTGTTAGAGGGGGGATGAGAAGTGTGGAATTCAAGGTTATTGAATGCGACCCTGCTGAGTATTGTGTCGTTGCACCTGACACTGAGATCTTCTGTGAAGGAGAGCCTGTTAAAAGGGAAGATGAGGATAGGTTAGATGAGGTTGGTTACGATGACGTTGGCGGGGTTAGAAAGCAGATGGCTCAAATCCGGGAACTGGTGGAACTGCCATTGAGGCATCCACAATTATTCAAGTCTATTGGTGTGAAACCACCAAAAGGTATTCTGTTGTATGGACCCCCTGGATCTGGGAAGACTTTAATTGCACGAGCCGTTGCAAATGAAACCGGTGCTTTCTTTTTCTGCATCAATGGTCCTGAGATCATGTCAAAGCTGGCTGGTGAGAGTGAAAGTAATTTGAGGAAGGCATTTGAAGAAGCTGAGAAGAATGCTCCTTCAATCATCTTCATTGATGAAATAGACTCCATTGCCCCAAAGAGGGAGAAGACAAATGGGGAAGTCGAGAGGAGAATTGTTTCCCAGCTCTTGACCCTCATGGATGGACTTAAATCCCGTGCACACGTTATAGTTATCGGAGCAACAAATCGTCCCAACAGCATTGACCCTGCTCTTCGTAGGTTTGGAAGGTTTGATCGGGAGATAGATATCGGTGTACCAGACGAAGTTGGACGTCTCGAGGTTCTTCGCATCCACACGAAAAATATGAAGCTTTCAGAAGATGTTGATCTAGAAAAGATTGCTAAGGAAACCCACGGTTATGTTGGTGCTGATTTAGCTGCTCTGTGTACTGAAGCTGCACTTCAGTGCATCAGAGAGAAAATGGATGTGATTGACCTAGAAGATGAAACCATTGATGCTGAGATATTGAACTCAATGGCAGTCACAAATGAACATTTCTCGACTGCACTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGGGATGATATTGGTGGTCTTGAAAATGTTAAGCGAGAACTCCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAGAAATTCGAGAAGTTTGGAATGTCACCTTCAAAGGGAGTTCTGTTCTACGGTCCTCCTGGTTGTGGTAAAACTCTTTTGGCCAAAGCTATCGCCAATGAATGTCAAGCAAACTTCATTAGTATCAAAGGTCCTGAGCTACTCACTATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGAGAAATTTTTGACAAAGCTCGTGGTTCTGCTCCATGTGTCCTATTCTTTGATGAACTTGATTCTATAGCAACTCAGAGAGGTAGTAGTTCAGGAGATGCTGGCGGTGCTGCTGACAGAGTTTTGAATCAACTGCTTACAGAAATGGATGGAATGTCAGCAAAGAAAACTGTGTTTATTATCGGGGCCACTAATCGACCTGATATTATAGACCCTGCTCTACTACGACCTGGACGTCTGGACCAGTTGATCTATATCCCCCTTCCAGATGAGGATTCCCGCCATAATATATTCAAAGCTGCCTTGAGAAAATCCCCCATCGCAAAGGATGTTGACATCAAAGCTCTTGCAAAGTACACTCAAGGCTTCAGTGGTGCTGATATTACTGAGATTTGCCAACGTGCATGCAAGTATGCTATAAGGGAGAACATTGAGAAGGATATTGAGAGAGAAAGAAGGAGAAGTGAAAATCCCGAGGCCATGGAAGAGGATAATGAAGATGAGGTAGCTGAAATCAAAGCTGCACATTTTGAAGAATCCATGAAATATGCACGAAGGAGTGTAAGCGACGCTGACATTCGCAAGTACCAAGCGTTTGCCCAAACATTGCAGCAATCAAGAGGGTTTGGAAGCGAGTTCAGGTTTGCAGACTCTAGTGCCGGCGGAACTGCTGCTGCTGCTTCAGCTGACCCTTTTGCAAGTGCTGGGGGAGCTGACGAGGACGACCTCTACAGTTAG 2427 0.4446 MANQPESSDSKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPDTMEKLSLFRGDTILIKGKKRKDTICIALADETCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDMFLVRGGMRSVEFKVIECDPAEYCVVAPDTEIFCEGEPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLEKIAKETHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFSTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHNIFKAALRKSPIAKDVDIKALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDNEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADSSAGGTAAAASADPFASAGGADEDDLYS* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3930 808 SUPERFAMILY ADC-like 27 110 IPR009010 -
Tpr1g3930 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 764 IPR027417 -
Tpr1g3930 808 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Tpr1g3930 808 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Tpr1g3930 808 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Tpr1g3930 808 SMART CDC48_2_2 130 196 IPR004201 -
Tpr1g3930 808 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Tpr1g3930 808 Pfam AAA+ lid domain 397 439 IPR041569 -
Tpr1g3930 808 Pfam AAA+ lid domain 673 713 IPR041569 -
Tpr1g3930 808 Gene3D - 210 374 IPR027417 -
Tpr1g3930 808 SMART CDC48_N_2 30 113 IPR003338 -
Tpr1g3930 808 SMART AAA_5 514 653 IPR003593 -
Tpr1g3930 808 SMART AAA_5 241 377 IPR003593 -
Tpr1g3930 808 MobiDBLite consensus disorder prediction 789 808 - -
Tpr1g3930 808 Gene3D - 113 209 - -
Tpr1g3930 808 Gene3D - 376 467 - -
Tpr1g3930 808 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Tpr1g3930 808 CDD AAA 484 651 - -
Tpr1g3930 808 PANTHER AAA-FAMILY ATPASE 5 785 - -
Tpr1g3930 808 PANTHER - 5 785 - -
Tpr1g3930 808 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Tpr1g3930 808 Pfam ATPase family associated with various cellular activities (AAA) 518 651 IPR003959 GO:0005524|GO:0016887
Tpr1g3930 808 Gene3D - 468 651 IPR027417 -
Tpr1g3930 808 Gene3D - 655 763 - -
Tpr1g3930 808 CDD AAA 211 374 - -
Tpr1g3930 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 466 IPR027417 -
Tpr1g3930 808 Gene3D - 7 112 - -
Tpr1g3930 808 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 31 767 IPR005938 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3930 Tpr-Chr1 43527450 43531628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3930 447 710 Calmodulin-binding Proteins AT3G56690 47.348 2.74e-79 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3930 K13525 - gmx:100791603 1523.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3930 1 43527450 43531628 Tpr1g3930 1 43527450 43531628 ECH