Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3918 ATGGAGCTCGAGAATAGTAGAAGAATGATTGATCCAAGAAGTGGGTTCTGCAGCTCCAATTCAATCTTCTATAGTAAGAGAAAACCCCTTCCACTCCCTCCAAACCATTCCTTAGATGCCACTACTTTCATCTCCTCCCGCCCCCATCATGGCCGCATCGCCTTCATCGACGCCTCCACCGGCCGTCAACTCACTTACCCACAACTCTGGCGAGCAGTAGACGCAGTCACCTCCTCTCTCTCCAACATGGGAATCCGTAAGGGTGACGTCATCCTCCTCCTCTCTCCCAACTCCATATACTTCCCTGTGGTGTGTCTCTCCGTCATCTCCCTCGGCGCCATCATCACCACCACCAATCCCCTCAACACAACACGCGAAATTGCAAAGCAGATCGCAGATTCTAAACCCGTCCTTGCCTTCACAACCCCTCCACTCGTTTCAAAAATCACAGGAGGAGGAGGAGCATCATCGCCCTCACTCCCAATTATTCTCATGGAAACCGATGGACACTACTCATCAAACACACTGGAGGAAATGATGAAAAAAGAACCCGATTCGAGTAGGGTGATGGAGCGAGTCAACCAGGACGACACTGCTACTCTACTCTACTCATCTGGAACGACCGGGCCAAGCAAAGGAGTAGTATCTTCGCAAAGAAACCTCATAGCGCTGGTTCAAATCGTATTGGCTAGGTTCAGCCAATACGAAGAAGAAGAAGAAGAAGAGCAGGGCCAGGGACAAACATTCATATGCACTGTTCCAATGTTTCATATATACGGTCTTGCAGTGTTCGCTCTGGGGGTACTGGCTTTGGGTTCAACCACAGTTGTTCTCTCCAAGTTCGAAATGCACGATATGCTTTTATCCATTGAGAAATTCAAAGCATCTTATCTGCCACTTGTGCCTCCCATACTGGTGGCTATGCTGAACAACGCGGATATAATTAAGAGCAAGTACGATCTGAGTTCCCTTCAGGCAGTGCTCTGTGGAGGGGCTCCTCTGAGCAAAGAGGTTACGGAAGGGTTTATTGAAAAGTACCCTGACGTTACTATATTTCAGGGTTATGGTCTGACGGAATCATCTGGAGTTGGGAGTTCCACTGAATCTTTGGAAGAGACTCGTAAGTATGGCACGGCTGGGCTTGTTTCTGCTTCTACGGAGGCTATGATTGTTGACACTGAAACTGCTCAACCTTTGCCGGTTAATCGGACCGGTGAGCTTTGGCTCAGGGGTCCCACCATTATGAAAGGTTATTTCAGTAACGAAGAGGCAACTACATCAACCCTTACTTCAGAGGGTTGGTTAAAAACAGGGGATATTTGCTATATTGATACAGATGGATTCTTATTTGTTGTGGATCGCTTGAAAGAGCTCATTAAATACAAGGGATATCAGGTCCCTCCAGCAGAACTAGAGGCTTTGTTGCTGACTCATCCTTCTGTTTTAGATGCTGCTGTAATACCGTATCCAGATAAAGAGGCAGGGCAATATCCAATGGCATATGTGGTAAGGAAGACCGGAAGTAATCTTTCAGAAAGCCAAGTTATGGATTTTGTTGCAGAGCAGGTGGCTCCGTACAAAAGAATTCGAAAAGTGGCATTCATATCTTCCGTACCTAAAAATCCATCTGGTAAAATTCTTCGAAAGGATCTCATCAAACTTGCAACGTCGAAACTTTGA 1680 0.4679 MELENSRRMIDPRSGFCSSNSIFYSKRKPLPLPPNHSLDATTFISSRPHHGRIAFIDASTGRQLTYPQLWRAVDAVTSSLSNMGIRKGDVILLLSPNSIYFPVVCLSVISLGAIITTTNPLNTTREIAKQIADSKPVLAFTTPPLVSKITGGGGASSPSLPIILMETDGHYSSNTLEEMMKKEPDSSRVMERVNQDDTATLLYSSGTTGPSKGVVSSQRNLIALVQIVLARFSQYEEEEEEEQGQGQTFICTVPMFHIYGLAVFALGVLALGSTTVVLSKFEMHDMLLSIEKFKASYLPLVPPILVAMLNNADIIKSKYDLSSLQAVLCGGAPLSKEVTEGFIEKYPDVTIFQGYGLTESSGVGSSTESLEETRKYGTAGLVSASTEAMIVDTETAQPLPVNRTGELWLRGPTIMKGYFSNEEATTSTLTSEGWLKTGDICYIDTDGFLFVVDRLKELIKYKGYQVPPAELEALLLTHPSVLDAAVIPYPDKEAGQYPMAYVVRKTGSNLSESQVMDFVAEQVAPYKRIRKVAFISSVPKNPSGKILRKDLIKLATSKL* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3918 559 PANTHER BNAA06G14440D PROTEIN 10 558 - -
Tpr1g3918 559 Gene3D - 457 558 IPR045851 -
Tpr1g3918 559 Pfam AMP-binding enzyme C-terminal domain 470 545 IPR025110 -
Tpr1g3918 559 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Tpr1g3918 559 Gene3D - 20 456 IPR042099 -
Tpr1g3918 559 CDD 4CL 32 551 - -
Tpr1g3918 559 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 558 - -
Tpr1g3918 559 Pfam AMP-binding enzyme 48 461 IPR000873 -
Tpr1g3918 559 SUPERFAMILY Acetyl-CoA synthetase-like 47 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3918 Tpr-Chr1 43301094 43304770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3918 9 559 Monolignol Biosynthesis Gene Families AT1G20500 64.121 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3918 K10526 - gmx:100811344 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3918 1 43301094 43304770 Tpr1g3918 1 43301094 43304770 ECH