Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3917 ATGGCGTCTCAATCTTCTTCAAACGAAGGCGGCCCTAGTACCCTCAATGTTTCATCAGATTCTTCAGATTCAACTGTTCACCTAAATGTCAAGACTCTTGATTCCCGAATCTACACCTTTCAAGTTCACAAAAATATGCCCGTTTCGCAGTTCAAAGAGAAAATTGCAAATGAAATAGGTGTTCCAGTTAGTCAGCAACGACTAATATTTAGAGGAAAAGTCTTAAAGGATGAACATGTTCTTTCTGAGTATCATTTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAGCCAAATCAGTCACAGACTCCTGGTACAGGCTCTGGTGAGACAACTAGCACAACCAGTAACCGAGGAAACGATGTTGGATCAGGAGCTCCTCGTAACCGTGTTGGGCAAATTTCGCACAGTGTGGTTCTTGGGACTTTTAATGTGGGGGAACAGGGTGAAGGCATTTCTCAAGACCTTACTCGGGTTATTGGGGCAGTTTTGAATTCTTTTGCGAACGGGGGCCAGAACACAATTAATGTTCCTAATTCCACACAAAATTCTTCAGCTCCAGCAGGGAATGAAACTGAAGGAAATCAAGCTGAAAATCAAAGCCTAGCCGGAAATCAGGCACCATCTGGACAGGCATTTTCTGGTCAAGCATTCCAATCACGGCCTCATGTTGTTCAGATTCCTATGGCTGCAGGAGCTATACCTGTTCCTTCTTTCAATGCACCAATTCCTGATTCACTGAGCACGCTGTCTGAGTTCATAAATCGCATGGAACATACACTTTCACAAAATGGTTATGGGCCAAATGTATCTTCAACTAACCTTGGAGATCAACAAGCTGAATTGCCTTCCAATACACAAGGGTTGCCGACACTTGAAGCACTGACCACTGTATTGCATCGTGCAGAACAGTTGCTTAGTGGTCAAGCTGTTTCTGCGCTATCTCATATTGCAGGGCGCATGGAGCGAGAGGGAACTTCTGCTGATCTAGGTATAAGGGGTCAAATACAGTCAGAGTCAGCACAGATAGGAATTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTAGGCCGAACTATGTTAACACTGCGAATGGGACGGTCTCCTGCAGAATCTGTTGTTAATGCTGGACCAGCAGTTTATATTTCTCCATCAGGGCCGAATCCTATAATGGCGCAGCCATTTCCACTTCAGACAAGTTCCCTCTTTGGCGGTCCACTTTCTTCAACTCCTGCAACTTTAGGCACCGTTGGTGTTGGAAGTGCTCCTAGGAACGTAAACATTCACATACACGCTGCTGCAATTGGCTCTAGACCAAATAATGGGGAAGGAACGAGGACTGAACACCGTAGTGAGCCTGGTTCTGGGGTTTCAGGTTCGACACGGGTTTTACCCGTTAGAAATGTTATGTCAGCAACTCTCCCATCCAACCCTTCTGGCACCGGAGCTGCTGGTAGCACACCAACTGGATTTAGTATTTCTACTTCACAGCTACCACCTGATTCAGCTCCATTATCATCTGTTTTAGCGGAAATCCATTCTCGCCTTAGAAACTCTGTTGGCAATATGCAAGGAGATAGCACAGTTCTGTCAGGCCAAATGCAATCAGCTAACAGGGACTTGTCTTCTGGATCTGAACCAAGACCCGCACATGTAAATGAACAGAGAGATACTGGGGAGACAAATGGATGTGGTGATGCCGGTGCATCCTCAGTTGGTCCCACTTCTGAAAGTGGAGTAGAGAAGCCCCAAACTGAGGCAATCAAAACCTGTAGTAATGACGAGAGAGATGTTTTGATCGACAAATTTGTTTCAAGTTCTTCCAATCAAGATTTACAAAGTTGTTCTAGTGGAGAAACAACGGTAAAATCAGAGAAAGTACAGGAGGCTCCAACTGTAAGTGAAAGACGAGATGTAACTGAACCTGCCAAAACTGCTCCTCTTGGACTGGGTGTGAGTGGTTTGGAGCGTAAGAAACGAACCAGACTTCAACCTCCTGTTGGTAAAGCTGCTGATGACGGATCCTCCAGTTCTTCCATCAATCGAAGTCAGGAACCAAGGACAGATAGTCAAAATATATTGCAAACACTCGCGAGTCAAGGATCTGCGGTTAATTTGATAAATGCTGACAGGCCATCATCTCAGCGACCCATACCCTCCGGTGGTAGTCAGATTGATGTGGCGGGTTTAATGTCTCAGGTTCTACATAGTCCTGCTCTGAATGGTTTGTTGGAAGGGTTTTCACAGCAAACAGGTGTCGACTCACCTGATGGCTTAAGGAACATGTTGCAGCAGTTCACTCAAAGCCCACAGATGATGAACACAGTCAATCAGATTGCCCAGCATGTTGGCAGTCAGGATATGGGGAACATGTTAACTGGAACGGGAAGAGGGCAGGGTGGTGGCGTTGATTTTTCAAGGATGTTTCAACAGATGATGCCCATTGTATCACAAGCCCTTGGAGGGGGAAATCCTCCATCATTATTCTCTGCTGCAGAACCAGAAACCCGTGCACCCTACAGGAATGAAAATTCCGATAATCAAAGTTTACAGCTCGACCTTCAACCAGTGGTAGAGAGGATTGATCGCCCAAGTCCACCTAGAGATGTCTTCCGTGCTGTAGCTGAAAATGCTGTACAGCTGTCTGGTAGCGGAAGTGCTTCTGATGATCTTCTGGATGAGTTATGTTGCAATGAAAGTCTTGCCAGTGAATATATGGAGATGTTGCGATATGATGTAAATCAGCTGCTTGAAGGACGTTCGAAGAGAGACAAGTCCTAA 2787 0.455 MASQSSSNEGGPSTLNVSSDSSDSTVHLNVKTLDSRIYTFQVHKNMPVSQFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHFENGHTLHLVERQPNQSQTPGTGSGETTSTTSNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGISQDLTRVIGAVLNSFANGGQNTINVPNSTQNSSAPAGNETEGNQAENQSLAGNQAPSGQAFSGQAFQSRPHVVQIPMAAGAIPVPSFNAPIPDSLSTLSEFINRMEHTLSQNGYGPNVSSTNLGDQQAELPSNTQGLPTLEALTTVLHRAEQLLSGQAVSALSHIAGRMEREGTSADLGIRGQIQSESAQIGIAMQHLGALLLELGRTMLTLRMGRSPAESVVNAGPAVYISPSGPNPIMAQPFPLQTSSLFGGPLSSTPATLGTVGVGSAPRNVNIHIHAAAIGSRPNNGEGTRTEHRSEPGSGVSGSTRVLPVRNVMSATLPSNPSGTGAAGSTPTGFSISTSQLPPDSAPLSSVLAEIHSRLRNSVGNMQGDSTVLSGQMQSANRDLSSGSEPRPAHVNEQRDTGETNGCGDAGASSVGPTSESGVEKPQTEAIKTCSNDERDVLIDKFVSSSSNQDLQSCSSGETTVKSEKVQEAPTVSERRDVTEPAKTAPLGLGVSGLERKKRTRLQPPVGKAADDGSSSSSINRSQEPRTDSQNILQTLASQGSAVNLINADRPSSQRPIPSGGSQIDVAGLMSQVLHSPALNGLLEGFSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIAQHVGSQDMGNMLTGTGRGQGGGVDFSRMFQQMMPIVSQALGGGNPPSLFSAAEPETRAPYRNENSDNQSLQLDLQPVVERIDRPSPPRDVFRAVAENAVQLSGSGSASDDLLDELCCNESLASEYMEMLRYDVNQLLEGRSKRDKS* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3917 928 MobiDBLite consensus disorder prediction 175 200 - -
Tpr1g3917 928 MobiDBLite consensus disorder prediction 91 131 - -
Tpr1g3917 928 MobiDBLite consensus disorder prediction 94 124 - -
Tpr1g3917 928 Gene3D - 15 110 - -
Tpr1g3917 928 MobiDBLite consensus disorder prediction 604 630 - -
Tpr1g3917 928 MobiDBLite consensus disorder prediction 1 24 - -
Tpr1g3917 928 SMART ubq_7 26 97 IPR000626 GO:0005515
Tpr1g3917 928 SUPERFAMILY Ubiquitin-like 21 100 IPR029071 -
Tpr1g3917 928 MobiDBLite consensus disorder prediction 532 691 - -
Tpr1g3917 928 MobiDBLite consensus disorder prediction 558 589 - -
Tpr1g3917 928 Pfam Ubiquitin family 28 98 IPR000626 GO:0005515
Tpr1g3917 928 PRINTS Ubiquitin signature 36 56 IPR019956 -
Tpr1g3917 928 PRINTS Ubiquitin signature 57 77 IPR019956 -
Tpr1g3917 928 PRINTS Ubiquitin signature 78 99 IPR019956 -
Tpr1g3917 928 CDD Ubl_ubiquitin_like 28 95 - -
Tpr1g3917 928 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 10 926 - -
Tpr1g3917 928 MobiDBLite consensus disorder prediction 435 466 - -
Tpr1g3917 928 PANTHER OS07G0498800 PROTEIN 10 926 - -
Tpr1g3917 928 MobiDBLite consensus disorder prediction 673 691 - -
Tpr1g3917 928 ProSiteProfiles Ubiquitin domain profile. 26 101 IPR000626 GO:0005515
Tpr1g3917 928 Coils Coil 925 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3917 Tpr-Chr1 43289666 43300113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3917 30 97 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 42.647 1.62e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3917 - - gmx:100783611 1276.15