Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3906 ATGGGATTAGGATTGTTCAAAGTTTTTTTTTGTTGTACCACAAATCAAGACATTCCCATTGTTTCTTCCGATTCAGAGTCCTCTCCTCGGCATAGCTCTGGCTATGGCTACAAACAACCAATGCTGCCAATTAGTCCCAAAAAATCTCCATCTTCTACTAGTAATCCACAAATTGGACAAATTTTAGGGAAACCTTACGTTGTAATAACCCAAATGTACGAGATGAACAAAGAGCTCGGACGAGGTCAATCAGGCGTGACATATTTATGTACCGAGAAAAGAACTGGGAGAGAATACGCGTGCAAATCGATATCAAGGGCAAAACTGTTGAGTGATCAAGAGATAGAAGATGTAAGAAGAGAGGTTATGATTCTGCAACATCTCTCGGGGCAACCGAATATAGTTGAATTCAGAGGAGCTTATGAGGACAAACAGAATGTGTATTTGGTGATGGAGGTTTGCAAAGGAGGTGAACTTTTCGATCGAATTATTGCTAAAGGGAACTATACCGAGCGTGAAGCAGCTACTATCATGAGACAGATTGTGAATGTGGTGCATGTGTGCCATTTCATGGGTGTTATGCATCGTGATCTTAAGCCTGAGAATTTCTTACTTGCTTCACAGGATGAGAATGCTACCGTTAAAGCTACTGATTTTGGACTCTCCATTTTCCTTGAAGAAGGTAAAGTATATAAAGAGCTTGTTGGAAGTGCATACTATGTAGCTCCAGAGGTGTTAAAACGGAATTATGGAAAGGAGATTGATGTCTGGAGTGCAGGAGTTATTTTATATATCCTCTTATGTGGGGTGCCTCCATTTTGGGCTGAAACCGAAAAAGGCATATTTCAAGCTATTTTGGAAGGTAAGCTCGATCTGGAGAGTGCACCGTGGCCTTCTATTTCAGCTGCTGCAAAAGATTTGATCAGGAAAATGCTGAGTTATGACCCTAAGAAACGCATTACAGCTTCTGATGCCCTTGAACACCCATGGATGAAGGAAGGTGGCGAGGCATCAGACAAGCCTTTAGACAATGCTGTTTTAATTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTAATAGCAGAAAACCTTTCAGATGAAGAAATCAAGGGATTGAAACAAATGTTCAACAATATTGATACTGATCGAAGTGGCACAATCACGTATGAAGAACTCAAATCTGGACTGTCCAAATTGGGATCCAAGCTTAATGAATCTGAAATAAAGCAGCTAATGGATGCTGCTGACGTTGACAAGAATGGAACTATTGACTATCATGAATTCATTACTGCCACTATTAATCGGCATAAACTTGAGAGGGAAGAGAATTTGTTCAAGGCTTTTCAATACTTTGACAAGGATAACAGCGGTTATGTAACAAGAGAAGAACTTAGACAAGCTTTGGCTGAATATCAAATGGGAGATGAAGCAACTATAGATGAAGTCATTGATGATGTTGACACTGACAATGATGGGAGAATTAATTACCAGGAGTTTGTAGCTATGATGAAAAAGGGAACCTTGGATAATGATGACAAAGAGAAACCGCAATAA 1575 0.3975 MGLGLFKVFFCCTTNQDIPIVSSDSESSPRHSSGYGYKQPMLPISPKKSPSSTSNPQIGQILGKPYVVITQMYEMNKELGRGQSGVTYLCTEKRTGREYACKSISRAKLLSDQEIEDVRREVMILQHLSGQPNIVEFRGAYEDKQNVYLVMEVCKGGELFDRIIAKGNYTEREAATIMRQIVNVVHVCHFMGVMHRDLKPENFLLASQDENATVKATDFGLSIFLEEGKVYKELVGSAYYVAPEVLKRNYGKEIDVWSAGVILYILLCGVPPFWAETEKGIFQAILEGKLDLESAPWPSISAAAKDLIRKMLSYDPKKRITASDALEHPWMKEGGEASDKPLDNAVLIRMKQFRAMNKMKKLALKVIAENLSDEEIKGLKQMFNNIDTDRSGTITYEELKSGLSKLGSKLNESEIKQLMDAADVDKNGTIDYHEFITATINRHKLEREENLFKAFQYFDKDNSGYVTREELRQALAEYQMGDEATIDEVIDDVDTDNDGRINYQEFVAMMKKGTLDNDDKEKPQ* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3906 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Tpr1g3906 524 SUPERFAMILY Protein kinase-like (PK-like) 70 338 IPR011009 -
Tpr1g3906 524 Pfam EF-hand domain pair 379 439 IPR002048 GO:0005509
Tpr1g3906 524 Pfam EF-hand domain pair 448 511 IPR002048 GO:0005509
Tpr1g3906 524 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Tpr1g3906 524 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
Tpr1g3906 524 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Tpr1g3906 524 SMART serkin_6 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3906 524 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3906 524 SMART efh_1 450 478 IPR002048 GO:0005509
Tpr1g3906 524 SMART efh_1 378 406 IPR002048 GO:0005509
Tpr1g3906 524 SMART efh_1 414 442 IPR002048 GO:0005509
Tpr1g3906 524 SMART efh_1 485 513 IPR002048 GO:0005509
Tpr1g3906 524 ProSitePatterns EF-hand calcium-binding domain. 423 435 IPR018247 -
Tpr1g3906 524 Gene3D - 339 517 - -
Tpr1g3906 524 ProSiteProfiles Protein kinase domain profile. 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3906 524 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Tpr1g3906 524 Gene3D Phosphorylase Kinase; domain 1 75 158 - -
Tpr1g3906 524 Gene3D Transferase(Phosphotransferase) domain 1 159 338 - -
Tpr1g3906 524 ProSiteProfiles EF-hand calcium-binding domain profile. 482 516 IPR002048 GO:0005509
Tpr1g3906 524 ProSiteProfiles EF-hand calcium-binding domain profile. 410 445 IPR002048 GO:0005509
Tpr1g3906 524 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Tpr1g3906 524 CDD STKc_CAMK 73 330 - -
Tpr1g3906 524 SUPERFAMILY EF-hand 370 511 IPR011992 -
Tpr1g3906 524 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Tpr1g3906 524 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 517 - -
Tpr1g3906 524 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 29 41 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3906 Tpr-Chr1 43152735 43158360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3906 44 524 EF-hand Containing Proteins AT3G20410 70.062 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tpr1g3906 Pkinase 2.2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3906 K13412 - gmx:100816157 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3906 1 43152735 43158360 Tpr1g3906 1 43152735 43158360 ECH