Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3904 ATGACTCAAACTCAAGACGAAGAGATGAAAGATCACCCAAAACCTTCCCACTCCATTACTCCAACTATTCCATCTACATTGCAAAATTTGAAGGAAATAGCATCAATCATTGAAACTGGTTCCAACTCTAAGGAAGTTCGCAGAATTTCTCGTGCTTTGCGCTCTACAATGGCGTTGAGGCCCAAGCTCACAGCTCCAGTTCTCTCATCTTTCATCGATCATGTTCTTCCTCCTGCTTCTGATTCTCACTCTAGGTTATCTTCTTATCTTCCCAATCCCAAGGATGATGATCACGACATGGAAGTGGACACTGCAACATCTGCAGCTATTCAAACCCCATCTAAGCACTTGTTGCCTGAGCTAGAAATTTACTCTTACTTTCTTGTGCTTCTTTTTCTTATTGATCAGAAACGATACAATGAGGCCAAAGCCTGTTCCTCAGCTAGCATTGATCGGCTCAAGAGCTTGAATAGAAGAACTGTTGATGTTATTGCTTCAAGACTGTATTTTTATTACTCATACAGCTATGAGCTTACTGGAGATCTTGCTGAAATTCGAGGCAACCTCTTTCAGTTGCACCGGATTGCTACCCTGCGCCATGATGAGCTTGGTCAGGAAACACTTCTTAATCTGTTACTTCGTAACTACCTCCACTACAACCTATATGATCAGGCAGAGAAGTTAAGGTCCAAGGCTCCGCGATTTGAGGCTCATTCAAACCAGCAGTTCTGCCGCTATCTCTTCTACCTTGGAAAAATTCGGACCATTCAGTTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAAGCACCAGTTGCAGCACAGGGTTTTCGGATTCAGTGTAACAAGTGGGCCATTATAGTGCGTTTACTGTTGGGAGAAATTCCTGAGAGGACTATCTTCGTGCAGAAAGGAATGGAAAAAGCTTTGAGGCCTTACTTTGAACTTACTAATGCTGTTAGGATTGGTGATTTAGAGCTGTTTAGGAATGTTGCAGAGAAGTATGCCACCACTTTCAGTACAGATGGAACCAATAATTTGATTGTTCGATTGCGTCATAATGTGATAAGGACTGGTTTGCGCAACATCAGTATATCATATTCTCGCATCTCGCTGGCTGATGTAGCTCAAAAGTTGAGATTGAGCTCTGCAGATCCCATTGCTGATGCAGAAAGCATTATATCAAAGGCTATCCGTGATGGAGCTATTGATGCAACATTGGATCATGCTAATAAATGGATGTTGTCCAAGGAAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCTTTAATTCTCGGATCGCCTTTTGTCTTAACATGCACAATGAGGCTGTTCAAGCACTGCGATTTCCAAAAAATACACACAAGGAGAAAGAAATTGCTGAGAAGCGGAGAGAGAGGCAACAGCAAGAGCAAGAACTGGCGAAGCATATTGAAGAGGATGATGACGATGATGACTTCTGA 1482 0.4278 MTQTQDEEMKDHPKPSHSITPTIPSTLQNLKEIASIIETGSNSKEVRRISRALRSTMALRPKLTAPVLSSFIDHVLPPASDSHSRLSSYLPNPKDDDHDMEVDTATSAAIQTPSKHLLPELEIYSYFLVLLFLIDQKRYNEAKACSSASIDRLKSLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLFQLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAQGFRIQCNKWAIIVRLLLGEIPERTIFVQKGMEKALRPYFELTNAVRIGDLELFRNVAEKYATTFSTDGTNNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLSSADPIADAESIISKAIRDGAIDATLDHANKWMLSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVQALRFPKNTHKEKEIAEKRRERQQQEQELAKHIEEDDDDDDF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3904 493 SMART PINT_4 350 443 IPR000717 -
Tpr1g3904 493 MobiDBLite consensus disorder prediction 1 15 - -
Tpr1g3904 493 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 4 491 - -
Tpr1g3904 493 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 350 443 - -
Tpr1g3904 493 MobiDBLite consensus disorder prediction 79 100 - -
Tpr1g3904 493 Pfam PCI domain 316 420 IPR000717 -
Tpr1g3904 493 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 4 491 - -
Tpr1g3904 493 MobiDBLite consensus disorder prediction 458 482 - -
Tpr1g3904 493 MobiDBLite consensus disorder prediction 1 24 - -
Tpr1g3904 493 Pfam Proteasome regulatory subunit C-terminal 425 491 IPR013586 GO:0000502|GO:0030234|GO:0042176
Tpr1g3904 493 Gene3D - 247 454 - -
Tpr1g3904 493 ProSiteProfiles PCI domain profile. 244 425 IPR000717 -
Tpr1g3904 493 MobiDBLite consensus disorder prediction 458 493 - -
Tpr1g3904 493 SUPERFAMILY "Winged helix" DNA-binding domain 353 425 IPR036390 -
Tpr1g3904 493 Coils Coil 459 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3904 Tpr-Chr1 43134046 43138845 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3904 K03033 - gmx:100814379 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3904 1 43134046 43138845 Tpr1g3904 1 43134046 43138845 ECH
Tpr1g3904 1 43134046 43138845 Tpr7g0203 7 1699034 1703318 PCT