Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3898 ATGGCCCAAACTACTCCTAATCACACACAGACCGTATCCGGTTGGGCTGCTCATGATTCTTCCGGCAAGATTACTCCATACACTTTCAAAAGAAGGGAGAACGGCGTTACTGATGTGACTATAAAAATTTTGTATTGTGGTATTTGCCACACTGATCTCCACCATGCCAAAGATGACTGGGGCATTACTATGTACCCTGTTGTTCCCGGGCATGAGATAACAGGGATTATCACCAAAGTTGGGAATGATGCAAAGGGTTTCAAAGAAGGAGACAGAGTTGGTGTGGGATGTTTGGCTGCTACATGTTTGGATTGTGAGTATTGCAACACAGATCAGGAGAACTACTGTGAAAAGTTGCAGTTTGTGTACAATGGTATTTTTTGGGATGGTAGCATCACTTATGGTGGCTACTCACAGATGTTGGTCGTAGATTACAGATATGTAGTACACATTCCAGAAAACCTACCAATGGATGCAGCTGCACCTCTACTGTGTGCTGGAATAACAGTATTCAATCCATTGAAGGATCATAATTTGGTATCATCACCAGGGAAGAAAATTGGTGTGGTTGGTTTGGGAGGACTTGGTCACATGGCTGTTAAATTTGGTAAAGCATTTGGTCACCATGTTACTGTCATAAGCACTTCTCCTTCCAAAGAAGCTGAGGCTAAAGAACGTTTAGGAGCTGATGATTTCATAATCAGCACCAATCCTGACCAATTGCAGGCTGCAAGGAGAAGTTTAGATTTCGTTTTGGACACTGTATCAGCAGATCATGCTCTCTTGCCCATTTTGGAATTGCTCAAAGTAAATGGGACTTTATTTATCGTTGGTGCACCCGACAAGCCATTACAATTACCTGCTTTTCCATTGATATTTGGGAAGAGATCCATAAAAGGTGGAATCATAGGAGGAATAAAAGAGACGCAGGAAATGTTGAATGTTTGTGGGAAGCACAATATCACTTGCGACATCGAGTTAATCAAAGCAAACACAATCAATGAGGCTTTTGAGCGCCTTGCGAAGAATGATGTTCGCTACCGTTTCGTTATTGACATAGCTAATGCTGCTCCCACCCAAGATAACTAA 1089 0.4224 MAQTTPNHTQTVSGWAAHDSSGKITPYTFKRRENGVTDVTIKILYCGICHTDLHHAKDDWGITMYPVVPGHEITGIITKVGNDAKGFKEGDRVGVGCLAATCLDCEYCNTDQENYCEKLQFVYNGIFWDGSITYGGYSQMLVVDYRYVVHIPENLPMDAAAPLLCAGITVFNPLKDHNLVSSPGKKIGVVGLGGLGHMAVKFGKAFGHHVTVISTSPSKEAEAKERLGADDFIISTNPDQLQAARRSLDFVLDTVSADHALLPILELLKVNGTLFIVGAPDKPLQLPAFPLIFGKRSIKGGIIGGIKETQEMLNVCGKHNITCDIELIKANTINEAFERLAKNDVRYRFVIDIANAAPTQDN* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3898 362 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491
Tpr1g3898 362 Gene3D - 166 323 - -
Tpr1g3898 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 321 IPR036291 -
Tpr1g3898 362 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Tpr1g3898 362 CDD CAD1 14 352 - -
Tpr1g3898 362 SUPERFAMILY GroES-like 17 180 IPR011032 -
Tpr1g3898 362 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Tpr1g3898 362 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED 1 357 - -
Tpr1g3898 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Tpr1g3898 362 Gene3D - 15 353 - -
Tpr1g3898 362 PANTHER ALDEHYDE REDUCTASE 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3898 Tpr-Chr1 43106840 43110595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3898 14 356 Monolignol Biosynthesis Gene Families AT2G21730 58.430 2.34e-146 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3898 K00083 - gmx:100820588 632.484