Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3896 ATGGAAAGATTAATGCAGGTAAGATTAGTGACAGTTTTTGTTGTTTTATTGGGTAGAGTATCCAATATTGCAATTGCACAAACTACAAATGCAGCATTTCCTGCTGTGTTTGCATTTGGTGACTCAATCTATGACACTGGAAATAATAACAACCTTTTAACTGCATCTAAGTGTAATTTTCCTCCCTATGGGAAGGATTTCTACGGAGGAAAGGCTACCGGAAGATTCGGTAACGGCAGAGTTCTATCAGATTTGATAACTTCGGCCTTGGGTGTGAAAGACACATTGCCAGCATTCTTGAATCCAGCTTTAACGGCTCAAGACCTTCCTACTGGGGTATGCTTTGCATCAGGTGGTTCAGGTTTAGACGATTTGACAGCAAACATGCAAGGAGGAGTATTGACAATGGGCGCTCAACTGAACCTGTTCCGACAATACATAGAAAAGCTGAAAGCAGTTGTTGGAGCAGATAAGGCGGCCGATATAATATCTAAAGCTTTGTTTATAATATCGGCAGGAAACAATGACGTTGCATTTGCTTATTCTTTTACTATAAGAAGAGCTTTGCCTTTCAATGTATATGCCGCTACTTTAGTTAGCGCAAGTCAAAATTTTCTCAAGAGTCTATATCAATTGGGCGCACGACATGTGTGGGTTCAAAGTACAGTGACATTGGGATGCTTACCAGCAGCTAGATCAACATTGGGTGGACCACTGAGGTTTTGTGTAGATTATGAGAATATCTACGCACAACAATTTAATGGCATGTTATCAGCAGGTGTTGCAAATCTTAAAAGCACCCTTCCTGATTATGATCTTAGATTTGTTGATGTCTATACTCCAATGCTTCGTCTCATACAAAATCCTTCTGCAGCAGGGTTCGTAAATGTGTGGAACGGGTGCTGTGGAACAGGAACATTTGAAATGGGACATGCATGCAATGCATTTACATTCCAATGTCCAAGTACTTCACAATACTTTTTTTGGGATGTTGCTCATCCTACTGAGAGAGCTTATCAAGCCACTCTTGCTCAATTGCTACATGCTCAAAACTACGATCTTAACAGTTACAATATTTCCAAAACTCTTCATCCTTTAAATGTATCAAATCTTATATTTTAA 1122 0.3957 MERLMQVRLVTVFVVLLGRVSNIAIAQTTNAAFPAVFAFGDSIYDTGNNNNLLTASKCNFPPYGKDFYGGKATGRFGNGRVLSDLITSALGVKDTLPAFLNPALTAQDLPTGVCFASGGSGLDDLTANMQGGVLTMGAQLNLFRQYIEKLKAVVGADKAADIISKALFIISAGNNDVAFAYSFTIRRALPFNVYAATLVSASQNFLKSLYQLGARHVWVQSTVTLGCLPAARSTLGGPLRFCVDYENIYAQQFNGMLSAGVANLKSTLPDYDLRFVDVYTPMLRLIQNPSAAGFVNVWNGCCGTGTFEMGHACNAFTFQCPSTSQYFFWDVAHPTERAYQATLAQLLHAQNYDLNSYNISKTLHPLNVSNLIF* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3896 373 SUPERFAMILY SGNH hydrolase 36 346 - -
Tpr1g3896 373 CDD SGNH_plant_lipase_like 34 349 IPR035669 -
Tpr1g3896 373 Pfam GDSL-like Lipase/Acylhydrolase 36 341 IPR001087 GO:0016788
Tpr1g3896 373 Gene3D SGNH hydrolase 23 352 IPR036514 -
Tpr1g3896 373 PANTHER GDSL ESTERASE/LIPASE EXL3 1 353 - -
Tpr1g3896 373 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 36 47 IPR008265 GO:0006629|GO:0016298
Tpr1g3896 373 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3896 Tpr-Chr1 43092958 43094873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3896 30 348 Pollen Coat Proteome AT1G75910 41.667 9.98e-78 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3896 - - mtr:MTR_1g025910 608.986