Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3894 ATGGAGAAGTTAATGTGGGTGAGATTAGTGACAATATTTCTTGTTTTATTTGGTAGAGTATCCAATATTGCAATTGCACAAAATACAAATGCAGCATTTCCTGCTGTGTTTGCATTTGGTGACTCAATCTTTGACACTGGAAATAATAACAACCTTTTAACTGCATCTAAGTGTAATTTTCCTCCATATGGCAAGGATTTCTACGGAGGACGGGCTACCGGAAGATTCGGTAACGGCAGAGTTTTATCAGATTTGATAACGTCGGCATTGGGAGTGAAAGACACATTGCCAGCGTTCTTGAATCCAGCTTTAACCGCGCAAGATCTTCCTACTGGGGTATGCTTTGCATCAGGTGGTTCAGGGTGGGACGATTTGACAGCAAACGTGCAGGGAGGAGTATTGACAATGGGCACTCAATTGAGATACTTTGAACAATACATAACAAAGTTGAGAGCAGTTGTTGGAACAGAAAAAGCTGCTGATATAATATCCAAAGCTTTGTTTATAATATCGGCAGGAAACAATGACGTTGCATTCGCTCATTCTTTTACTATAAGGCATCTTTTGCCTTTCAATGTATATGGCGGTCAATTAGTCGGCGCAAGTCAAAATTTCCTCAAGAGTCTGTATCAATTGGGCGCACGACACGTGTGGGTTTTAAGTACACTGCCATTGGGATGCCTACCTGCTGCTAGATCAATTACTGGACCATTGAGGTTATGTGTAGATGTTGAGAATATTTTGGCAACACAATTCAATGGTTGGTTAGCAAATGGACTTGCAAGTCTTAAAAGCTCTCTTCCTGATTATGATCTTAGATTCGTTGATGTCTATACTCCTATGCTTCGTCTCATACAGAATCCTCTTGCAGCAGGGTTTGTGAATGTGTGGAATGGGTGCTGTGGAACAGGAACATTTGAAATGGGAGCAGCATGCAATGTATTTACATTCCAATGTCCAAGTGATGCATCATACTTTTTCTGGGATGTTGCTCATCCTTCAGAGAGAGCTTATAAAGCCACAATTGCTCAATTGTTTCACGCTCAAAACTACGATCTTACTAGTTACAATATTTCCCAAACTATTCATCCTTTGAATGTATCAAATCTTATCTTTTAA 1119 0.4004 MEKLMWVRLVTIFLVLFGRVSNIAIAQNTNAAFPAVFAFGDSIFDTGNNNNLLTASKCNFPPYGKDFYGGRATGRFGNGRVLSDLITSALGVKDTLPAFLNPALTAQDLPTGVCFASGGSGWDDLTANVQGGVLTMGTQLRYFEQYITKLRAVVGTEKAADIISKALFIISAGNNDVAFAHSFTIRHLLPFNVYGGQLVGASQNFLKSLYQLGARHVWVLSTLPLGCLPAARSITGPLRLCVDVENILATQFNGWLANGLASLKSSLPDYDLRFVDVYTPMLRLIQNPLAAGFVNVWNGCCGTGTFEMGAACNVFTFQCPSDASYFFWDVAHPSERAYKATIAQLFHAQNYDLTSYNISQTIHPLNVSNLIF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3894 372 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 352 - -
Tpr1g3894 372 SUPERFAMILY SGNH hydrolase 37 342 - -
Tpr1g3894 372 Pfam GDSL-like Lipase/Acylhydrolase 36 341 IPR001087 GO:0016788
Tpr1g3894 372 CDD SGNH_plant_lipase_like 34 348 IPR035669 -
Tpr1g3894 372 Gene3D SGNH hydrolase 22 351 IPR036514 -
Tpr1g3894 372 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 36 47 IPR008265 GO:0006629|GO:0016298
Tpr1g3894 372 PANTHER GDSL ESTERASE/LIPASE EXL3 1 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3894 Tpr-Chr1 43072021 43073816 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3894 10 347 Pollen Coat Proteome AT1G75910 40.751 3.80e-75 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3894 - - mtr:MTR_1g025910 617.076