Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3891 ATGGGTCGTGGAAGAATATCTATGAAACTCGTTCAAAAGGAGAAATCAAGACAGAAAACATTTTTAACCAGAAAGAATGGTTTAATGAAAAAAGTGAAAGAATTGTCTACTCTTTGTGATGTTGATGTTTGTGTGATTCTCTATGCTCCCAACTTTCAAGGGCAGGGATTTGTAGAACCTGAAACATGGCCCAAAGACCCATCAGAGGTACAAAGCGTTCTCCAAAAGTACTACAATACAACAAATGATAGGCGTCTTAGGATCTATGATATTCAAGAATATTTCAAGGGAAAGATGAAAAAAGTTGAATCTGAGATTTTCAATGTGCACAAAAAGATGCTAAAGGTCATGTATCCAACATGGAATGAATCTTTCAACTCTTTTGGAGAGGAACAATTGAGGTTATTTGCTAGCATGTTGGATTCAAAACTTGATGCTTGCAATCAAAGGATGAATATGCTAAAAGGAGATCATAATGGTAAAGCAATAACTGAATCACACAAGGTTGATAAATTACCTAATAGTAATACTCCTTATTTAACCTCAAATCCAAGTAGCTACTTCAATCTCATGCAAAACAACTTCTCCATTATTAGTGATAAAAATCCCTTTGAATTTTGGCCACTTGAATTGGGGCAGATGAGCTCTCAACCTTCTTCGATGTTTTCCAGTGCACAAGGTTCCTATCAAGTGCAGTCTTATCCTTACAATCATGTTGATGCTAATTGGGCTCATCAAGTTGATGCTAATGTTACCTATGATCCGAAAATCGATACAAAAATGAAGGATGGAGCCGAAAACGCTGAAAACTTATCATCATCATACTATTACAATGGAAATACACCAGCAATGCAATCATATCATCATAATGCTATGCAAACTCTTCCTTTTGATCAGAATCTTCCAAACCTAATGGATTTCAACTTTAATGGATTTTATGATATAGATGGAAAGGAGTAG 960 0.3542 MGRGRISMKLVQKEKSRQKTFLTRKNGLMKKVKELSTLCDVDVCVILYAPNFQGQGFVEPETWPKDPSEVQSVLQKYYNTTNDRRLRIYDIQEYFKGKMKKVESEIFNVHKKMLKVMYPTWNESFNSFGEEQLRLFASMLDSKLDACNQRMNMLKGDHNGKAITESHKVDKLPNSNTPYLTSNPSSYFNLMQNNFSIISDKNPFEFWPLELGQMSSQPSSMFSSAQGSYQVQSYPYNHVDANWAHQVDANVTYDPKIDTKMKDGAENAENLSSSYYYNGNTPAMQSYHHNAMQTLPFDQNLPNLMDFNFNGFYDIDGKE* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3891 319 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 217 - -
Tpr1g3891 319 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr1g3891 319 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr1g3891 319 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr1g3891 319 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 51 IPR002100 GO:0003677|GO:0046983
Tpr1g3891 319 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr1g3891 319 PANTHER MADS BOX PROTEIN 3 217 - -
Tpr1g3891 319 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Tpr1g3891 319 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Tpr1g3891 319 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr1g3891 319 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3891 Tpr-Chr1 43046207 43047166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3891 1 150 Type I MADS-box Gene Family AT5G55690 35.762 3.18e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr1g3891 SRF-TF 1.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3891 - - mtr:MTR_1g114730 358.221